PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
71101-71150 / 86044 show all
astatham-gatkINDELI16_PLUSmap_l125_m2_e0homalt
75.0000
100.0000
60.0000
97.7578
30320
0.0000
astatham-gatkINDELI16_PLUSmap_l125_m2_e1homalt
75.0000
100.0000
60.0000
97.7578
30320
0.0000
anovak-vgINDELC1_5map_l125_m2_e0*
0.0000
0.0000
60.0000
97.7578
00320
0.0000
gduggal-snapplatINDELD6_15map_l150_m0_e0het
48.6957
35.0000
80.0000
97.7578
713410
0.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_diTR_51to200het
75.5556
62.9630
94.4444
97.7584
17101710
0.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_diTR_51to200*
89.6552
81.2500
100.0000
97.7586
1331300
ghariani-varprowlINDELD1_5map_l250_m0_e0*
75.6757
91.3043
64.6154
97.7586
42442232
8.6957
eyeh-varpipeINDEL*map_l250_m2_e0hetalt
66.6667
50.0000
100.0000
97.7591
33800
bgallagher-sentieonINDEL*map_l250_m0_e0*
90.2439
94.8718
86.0465
97.7598
74474122
16.6667
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
72.0930
70.4545
73.8095
97.7600
3113311110
90.9091
cchapple-customINDEL*map_l250_m0_e0het
89.0909
92.4528
85.9649
97.7603
4944980
0.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7612
30300
asubramanian-gatkINDELD16_PLUSmap_l125_m2_e1*
87.2727
85.7143
88.8889
97.7612
2442430
0.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
97.7612
1501500
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7612
30300
dgrover-gatkINDELI16_PLUSmap_l150_m0_e0*
80.0000
100.0000
66.6667
97.7612
40420
0.0000
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
97.7612
1501500
ckim-isaacINDELI6_15map_l150_m0_e0*
54.5455
37.5000
100.0000
97.7612
35300
jlack-gatkINDELD1_5map_l150_m2_e0hetalt
92.3077
85.7143
100.0000
97.7612
61600
jli-customINDELD16_PLUSmap_l250_m2_e0het
100.0000
100.0000
100.0000
97.7612
30300
ghariani-varprowlINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
0.0000
0.0000
97.7612
026033
100.0000
hfeng-pmm1INDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
97.7612
30300
ckim-gatkINDELD16_PLUSmap_l125_m2_e0het
95.2381
100.0000
90.9091
97.7620
2002020
0.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200*
100.0000
100.0000
100.0000
97.7622
1601600
asubramanian-gatkINDELD6_15map_l250_m2_e1het
96.2963
92.8571
100.0000
97.7625
1311300
gduggal-bwavardSNP*lowcmp_SimpleRepeat_triTR_51to200het
83.3333
100.0000
71.4286
97.7636
70520
0.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_51to200het
72.7273
70.5882
75.0000
97.7654
1251241
25.0000
hfeng-pmm2INDELI16_PLUSmap_l125_m2_e0homalt
85.7143
100.0000
75.0000
97.7654
30310
0.0000
hfeng-pmm2INDELI16_PLUSmap_l125_m2_e1homalt
85.7143
100.0000
75.0000
97.7654
30310
0.0000
dgrover-gatkINDELI16_PLUSmap_l150_m1_e0homalt
85.7143
100.0000
75.0000
97.7654
30310
0.0000
ckim-vqsrINDELD16_PLUSmap_l125_m2_e1*
94.7368
96.4286
93.1034
97.7658
2712720
0.0000
ckim-dragenINDELD16_PLUSmap_l125_m0_e0*
76.9231
83.3333
71.4286
97.7671
1021041
25.0000
anovak-vgINDELC1_5map_l125_m2_e1*
0.0000
0.0000
60.0000
97.7679
00320
0.0000
gduggal-bwafbINDELD6_15map_l250_m2_e1homalt
90.9091
83.3333
100.0000
97.7679
51500
jlack-gatkINDELI16_PLUSmap_l150_m1_e0*
85.7143
81.8182
90.0000
97.7679
92910
0.0000
gduggal-bwavardINDEL*map_l250_m0_e0*
75.2577
93.5897
62.9310
97.7692
73573432
4.6512
astatham-gatkINDELD16_PLUSmap_l250_m2_e1*
83.3333
100.0000
71.4286
97.7707
50520
0.0000
qzeng-customINDELD16_PLUSmap_l125_m0_e0*
59.0909
100.0000
41.9355
97.7714
12013180
0.0000
ckim-dragenSNP*segduphetalt
93.3333
100.0000
87.5000
97.7716
70711
100.0000
ckim-dragenSNPtvsegduphetalt
93.3333
100.0000
87.5000
97.7716
70711
100.0000
ghariani-varprowlINDELD16_PLUSmap_l125_m2_e1het
86.3636
95.0000
79.1667
97.7716
1911952
40.0000
gduggal-snapvardINDELI1_5map_l250_m0_e0*
77.9468
83.3333
73.2143
97.7734
20441153
20.0000
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
0.0000
97.7778
00010
0.0000
qzeng-customINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
97.7778
00040
0.0000
qzeng-customINDEL*map_l250_m2_e1hetalt
90.9091
83.3333
100.0000
97.7778
51300
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.7778
10100
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.7778
10100
qzeng-customSNPtilowcmp_SimpleRepeat_diTR_51to200*
80.0000
87.5000
73.6842
97.7778
1421450
0.0000
mlin-fermikitINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.7778
10100
gduggal-bwavardINDELC16_PLUSmap_l150_m0_e0het
0.0000
0.0000
97.7778
00010
0.0000