PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
70801-70850 / 86044 show all
ckim-isaacINDEL*map_l250_m2_e1het
69.5232
54.0284
97.4790
97.6119
1149711633
100.0000
egarrison-hhgaINDEL*map_l100_m2_e0*
97.4507
97.2380
97.6643
97.6120
359110235968639
45.3488
qzeng-customINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
94.4444
97.6127
001710
0.0000
qzeng-customINDEL*map_l125_m0_e0hetalt
84.2105
72.7273
100.0000
97.6190
83300
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_51to200*
66.6667
100.0000
50.0000
97.6190
10110
0.0000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.6190
40300
ckim-dragenINDELD6_15map_l250_m1_e0homalt
88.8889
80.0000
100.0000
97.6190
41400
ciseli-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
0.0000
0.0000
97.6190
00010
0.0000
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.6190
10100
ghariani-varprowlINDELD6_15map_l250_m2_e0het
93.3333
100.0000
87.5000
97.6190
1401421
50.0000
ltrigg-rtg2INDELC1_5map_l125_m0_e0hetalt
0.0000
0.0000
100.0000
97.6190
00100
ltrigg-rtg2INDELC1_5map_l125_m2_e0homalt
0.0000
0.0000
100.0000
97.6190
00400
ltrigg-rtg2INDELC1_5map_l150_m1_e0homalt
0.0000
0.0000
100.0000
97.6190
00300
ltrigg-rtg1INDELC6_15lowcmp_SimpleRepeat_diTR_51to200het
0.0000
0.0000
97.6190
00010
0.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.6190
20200
bgallagher-sentieonINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.6190
20200
astatham-gatkINDELD1_5map_l150_m2_e0hetalt
92.3077
85.7143
100.0000
97.6190
61600
anovak-vgINDELC1_5map_l150_m0_e0*
0.0000
0.0000
50.0000
97.6190
00110
0.0000
asubramanian-gatkINDELC16_PLUSmap_l100_m2_e0*
0.0000
0.0000
97.6190
00010
0.0000
cchapple-customINDELC16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
0.0000
0.0000
97.6190
00022
100.0000
cchapple-customINDELC16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
0.0000
0.0000
97.6190
00010
0.0000
ckim-isaacINDELD16_PLUSmap_l150_m2_e1het
21.0526
12.5000
66.6667
97.6190
214210
0.0000
ckim-isaacINDELI1_5map_l250_m2_e0het
80.0000
66.6667
100.0000
97.6190
44224400
hfeng-pmm2INDELI6_15map_l250_m2_e0homalt
80.0000
66.6667
100.0000
97.6190
21200
jlack-gatkINDELI6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.6190
10100
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.6190
10100
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.6190
10100
gduggal-bwavardINDELC1_5map_l250_m1_e0homalt
0.0000
0.0000
100.0000
97.6190
00200
qzeng-customINDELD16_PLUSmap_l150_m2_e0*
66.4481
94.1176
51.3514
97.6206
16119180
0.0000
ciseli-customINDELD1_5map_l250_m0_e0homalt
76.9231
76.9231
76.9231
97.6234
1031032
66.6667
egarrison-hhgaINDEL*map_l100_m2_e1*
97.3869
97.1778
97.5968
97.6235
365010636559041
45.5556
ciseli-customINDELC1_5*het
47.4725
44.4444
50.9434
97.6237
4581785
6.4103
gduggal-bwaplatINDELD16_PLUSmap_l150_m2_e1*
75.8621
61.1111
100.0000
97.6242
1171100
cchapple-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
0.0000
0.0000
50.0000
97.6247
00554
80.0000
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_diTR_51to200*
82.3529
80.7692
84.0000
97.6258
2152140
0.0000
ckim-gatkINDEL*map_l250_m2_e0het
89.9123
97.6190
83.3333
97.6273
2055205412
4.8781
gduggal-snapvardINDELC6_15segduphet
0.0000
0.0000
25.0000
97.6285
00393
33.3333
ckim-vqsrINDELD6_15map_l250_m2_e1*
100.0000
100.0000
100.0000
97.6293
2202200
jli-customINDELI16_PLUSmap_l100_m1_e0homalt
100.0000
100.0000
100.0000
97.6303
50500
rpoplin-dv42INDEL*map_l250_m0_e0het
92.4528
92.4528
92.4528
97.6318
4944941
25.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m2_e1het
95.2381
100.0000
90.9091
97.6319
2002020
0.0000
asubramanian-gatkINDELD16_PLUSmap_l125_m2_e0het
87.8049
90.0000
85.7143
97.6325
1821830
0.0000
jmaeng-gatkINDELI1_5map_l250_m2_e1*
93.9130
94.7368
93.1034
97.6346
108610882
25.0000
ckim-gatkINDELD16_PLUSmap_l125_m0_e0*
92.3077
100.0000
85.7143
97.6351
1201220
0.0000
asubramanian-gatkINDELD6_15map_l250_m1_e0*
90.9091
83.3333
100.0000
97.6366
1531600
jlack-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200*
90.9091
83.3333
100.0000
97.6367
3573500
jli-customINDELI6_15map_l250_m1_e0het
57.1429
50.0000
66.6667
97.6378
22211
100.0000
astatham-gatkINDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
97.6378
60600
ckim-gatkINDELD16_PLUSmap_l125_m2_e0*
94.7368
100.0000
90.0000
97.6378
2702730
0.0000
ciseli-customINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
0.0000
0.0000
33.3333
97.6378
00120
0.0000