PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
70751-70800 / 86044 show all
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
36.7347
85.7143
23.3766
97.5877
366361181
0.8475
gduggal-bwaplatINDELD16_PLUSmap_l150_m2_e0*
78.5714
64.7059
100.0000
97.5877
1161100
gduggal-bwaplatINDELI6_15map_l150_m1_e0*
68.4211
52.0000
100.0000
97.5881
13121300
ckim-dragenINDELD16_PLUSmap_l125_m2_e1*
80.6452
89.2857
73.5294
97.5887
2532592
22.2222
ndellapenna-hhgaINDEL*map_l100_m1_e0*
97.2875
96.9325
97.6451
97.5899
347611034838438
45.2381
ciseli-customINDEL*map_l250_m1_e0het
57.5615
54.7368
60.6936
97.5902
104861056832
47.0588
ckim-gatkINDELD16_PLUSmap_l150_m1_e0*
90.9091
100.0000
83.3333
97.5904
1501530
0.0000
ndellapenna-hhgaINDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.5904
20200
qzeng-customINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
50.0000
97.5904
00220
0.0000
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
97.5904
30332
66.6667
gduggal-snapplatINDELI6_15map_l125_m0_e0het
0.0000
0.0000
97.5904
09020
0.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.5904
20200
gduggal-bwaplatINDELD16_PLUSmap_l125_m2_e0het
75.0000
60.0000
100.0000
97.5904
1281200
gduggal-bwavardINDELD6_15map_l250_m2_e1het
93.3333
100.0000
87.5000
97.5904
1401421
50.0000
gduggal-bwavardINDELC16_PLUSmap_l100_m1_e0*
0.0000
0.0000
25.0000
97.5904
00130
0.0000
eyeh-varpipeSNP*lowcmp_SimpleRepeat_triTR_51to200het
76.9231
100.0000
62.5000
97.5904
70530
0.0000
ckim-vqsrINDELI1_5map_l250_m2_e1*
94.7826
95.6140
93.9655
97.5904
109510971
14.2857
jpowers-varprowlINDELD16_PLUSmap_l125_m1_e0het
87.8049
90.0000
85.7143
97.5917
1821832
66.6667
qzeng-customINDELI6_15map_l150_m0_e0het
36.3636
25.0000
66.6667
97.5936
13631
33.3333
gduggal-snapvardINDELC1_5map_l250_m1_e0het
0.0000
0.0000
20.0000
97.5938
005201
5.0000
qzeng-customINDELD1_5map_l250_m2_e1*
81.4309
72.4324
92.9825
97.5939
134511591210
83.3333
jli-customINDELI6_15map_l250_m1_e0*
66.6667
57.1429
80.0000
97.5962
43411
100.0000
jlack-gatkINDELI16_PLUSmap_l125_m2_e0*
89.6552
86.6667
92.8571
97.5986
1321310
0.0000
jlack-gatkINDELI16_PLUSmap_l125_m2_e1*
89.6552
86.6667
92.8571
97.5986
1321310
0.0000
jlack-gatkINDELD16_PLUSmap_l125_m2_e0het
92.6829
95.0000
90.4762
97.6000
1911920
0.0000
hfeng-pmm1INDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.6000
30300
cchapple-customINDELI16_PLUSmap_l150_m1_e0homalt
100.0000
100.0000
100.0000
97.6000
30300
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
92.0000
85.1852
100.0000
97.6000
234300
ciseli-customINDELI6_15map_l150_m2_e1het
31.5789
18.7500
100.0000
97.6000
313300
astatham-gatkINDELD16_PLUSmap_l250_m0_e0*
50.0000
100.0000
33.3333
97.6000
10120
0.0000
astatham-gatkINDELI16_PLUSmap_l100_m1_e0homalt
90.9091
100.0000
83.3333
97.6000
50510
0.0000
gduggal-bwavardINDELC6_15map_l125_m2_e1*
0.0000
0.0000
33.3333
97.6000
00240
0.0000
gduggal-bwafbINDELI1_5map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.6000
90900
dgrover-gatkINDELD1_5map_l250_m0_e0*
94.8454
100.0000
90.1961
97.6023
4604650
0.0000
cchapple-customINDELI6_15map_l250_m2_e0*
80.0000
75.0000
85.7143
97.6027
62610
0.0000
ckim-dragenINDELD16_PLUSmap_l125_m2_e0*
83.3333
92.5926
75.7576
97.6035
2522581
12.5000
dgrover-gatkINDELI6_15map_l150_m0_e0het
75.0000
75.0000
75.0000
97.6048
31311
100.0000
egarrison-hhgaINDELD6_15map_l250_m0_e0het
100.0000
100.0000
100.0000
97.6048
40400
gduggal-snapvardINDELC1_5map_l250_m2_e1homalt
0.0000
0.0000
100.0000
97.6048
00400
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
97.6048
42400
gduggal-bwafbINDELD1_5map_l150_m2_e0hetalt
72.7273
57.1429
100.0000
97.6048
43400
asubramanian-gatkINDELI1_5map_l250_m0_e0homalt
94.1176
88.8889
100.0000
97.6048
81800
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
86.9565
100.0000
76.9231
97.6059
201033
100.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
68.7192
73.8095
64.2857
97.6068
311118102
20.0000
ciseli-customINDELD6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
97.6077
50500
ltrigg-rtg2INDELC1_5map_l100_m1_e0homalt
0.0000
0.0000
100.0000
97.6077
00500
ltrigg-rtg2INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
0.0000
0.0000
90.0000
97.6077
00911
100.0000
hfeng-pmm3INDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
97.6096
60600
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
39.0909
69.3548
97.6108
436743198
42.1053
bgallagher-sentieonINDELD16_PLUSmap_l250_m2_e1*
83.3333
100.0000
71.4286
97.6109
50520
0.0000