PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70551-70600 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e0 | het | 90.1186 | 94.2149 | 86.3636 | 97.4995 | 114 | 7 | 114 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.5000 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 97.5000 | 0 | 3 | 0 | 2 | 2 | 100.0000 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 97.5000 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 97.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 13 | 0 | 13 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 83.3333 | 83.3333 | 83.3333 | 97.5000 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.5000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 97.5000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.5000 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.5000 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.5000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5000 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 97.5000 | 1 | 4 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 97.5000 | 1 | 4 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5000 | 6 | 1 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 3 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 80.9524 | 79.0698 | 97.5058 | 34 | 8 | 34 | 9 | 1 | 11.1111 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | homalt | 85.3948 | 76.0870 | 97.2973 | 97.5067 | 35 | 11 | 36 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.5078 | 0 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 92.6829 | 86.3636 | 100.0000 | 97.5093 | 19 | 3 | 20 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 94.0171 | 96.4912 | 91.6667 | 97.5093 | 110 | 4 | 110 | 10 | 2 | 20.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.5104 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5113 | 22 | 0 | 22 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | homalt | 85.0304 | 75.5556 | 97.2222 | 97.5121 | 34 | 11 | 35 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 93.1034 | 96.4286 | 90.0000 | 97.5124 | 27 | 1 | 27 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.5124 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | * | 50.0000 | 42.8571 | 60.0000 | 97.5124 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.5124 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.2105 | 88.8889 | 80.0000 | 97.5124 | 16 | 2 | 16 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | het | 88.9423 | 97.3684 | 81.8584 | 97.5127 | 185 | 5 | 185 | 41 | 2 | 4.8781 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | het | 83.7321 | 82.9384 | 84.5411 | 97.5144 | 175 | 36 | 175 | 32 | 3 | 9.3750 | |