PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
70501-70550 / 86044 show all
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.4684
20200
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
50.0000
33.3333
100.0000
97.4684
24200
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
97.4684
22200
gduggal-snapfbINDELD6_15map_l250_m1_e0homalt
66.6667
60.0000
75.0000
97.4684
32311
100.0000
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.4684
20200
ckim-vqsrINDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.4684
20200
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
74.0741
66.6667
83.3333
97.4684
42511
100.0000
ltrigg-rtg1INDELC1_5map_l125_m2_e1*
0.0000
0.0000
100.0000
97.4684
001400
ltrigg-rtg2INDELC1_5map_l125_m2_e0*
0.0000
0.0000
100.0000
97.4684
001400
ltrigg-rtg2INDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
75.0000
97.4684
00621
50.0000
ltrigg-rtg2INDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
78.3552
66.6667
95.0139
97.4690
21343181
5.5556
ckim-vqsrINDELD16_PLUSmap_l125_m1_e0het
97.5610
100.0000
95.2381
97.4699
2002010
0.0000
eyeh-varpipeINDELC1_5map_l150_m0_e0*
0.0000
0.0000
92.3077
97.4708
001210
0.0000
gduggal-bwavardINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
23.0769
97.4708
003102
20.0000
egarrison-hhgaINDEL*map_l250_m0_e0homalt
97.9592
96.0000
100.0000
97.4710
2412400
gduggal-snapplatINDELD6_15map_l125_m0_e0*
48.0801
34.0426
81.8182
97.4713
1631920
0.0000
jlack-gatkINDEL*map_l250_m2_e0het
87.0690
96.1905
79.5276
97.4716
2028202521
1.9231
jlack-gatkINDELD16_PLUSsegduphet
97.2973
100.0000
94.7368
97.4717
3703621
50.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
0.0000
0.0000
95.2381
97.4729
002011
100.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m0_e0*
92.3077
100.0000
85.7143
97.4729
1201220
0.0000
asubramanian-gatkINDELI6_15map_l150_m0_e0*
72.2892
62.5000
85.7143
97.4729
53611
100.0000
eyeh-varpipeINDELC1_5map_l150_m1_e0het
0.0000
0.0000
83.3333
97.4737
001020
0.0000
gduggal-bwaplatINDEL*map_l125_m2_e1hetalt
71.6418
55.8140
100.0000
97.4737
24192400
ghariani-varprowlINDEL*map_l250_m2_e0het
86.0169
96.6667
77.4809
97.4752
20372035910
16.9492
qzeng-customINDELD16_PLUSmap_l100_m0_e0homalt
34.7826
80.0000
22.2222
97.4755
414140
0.0000
ciseli-customINDELI1_5map_l250_m2_e1*
46.1538
39.4737
55.5556
97.4782
4569453627
75.0000
gduggal-bwafbINDEL*map_l150_m0_e0hetalt
94.1176
88.8889
100.0000
97.4790
81300
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.4790
30300
asubramanian-gatkSNPtvmap_l150_m0_e0het
32.4897
19.4161
99.4595
97.4792
552229155231
33.3333
gduggal-snapplatINDELI1_5map_sirenhetalt
38.7454
26.7857
70.0000
97.4795
308228126
50.0000
ckim-vqsrINDEL*map_l250_m2_e1*
93.4911
94.8949
92.1283
97.4798
31617316272
7.4074
astatham-gatkINDEL*map_l250_m0_e0homalt
94.1176
96.0000
92.3077
97.4806
2412421
50.0000
dgrover-gatkINDELI16_PLUSmap_l100_m2_e0homalt
83.3333
100.0000
71.4286
97.4820
50520
0.0000
egarrison-hhgaINDEL*map_l100_m1_e0*
97.4160
97.1835
97.6497
97.4833
348510134908439
46.4286
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_diTR_51to200*
37.3333
53.8462
28.5714
97.4833
141214351
2.8571
jlack-gatkINDELD16_PLUSmap_l150_m2_e0*
86.4865
94.1176
80.0000
97.4843
1611641
25.0000
asubramanian-gatkINDELD16_PLUSmap_l150_m1_e0het
88.8889
85.7143
92.3077
97.4855
1221210
0.0000
gduggal-bwavardSNP*lowcmp_SimpleRepeat_triTR_51to200*
80.0000
100.0000
66.6667
97.4860
90630
0.0000
jli-customINDELD16_PLUSmap_l250_m2_e1*
100.0000
100.0000
100.0000
97.4874
50500
jlack-gatkINDELD1_5map_l150_m1_e0hetalt
92.3077
85.7143
100.0000
97.4895
61600
gduggal-bwavardINDELD16_PLUSmap_l250_m2_e0het
44.4444
66.6667
33.3333
97.4895
21241
25.0000
bgallagher-sentieonINDELI16_PLUSmap_l100_m2_e0homalt
83.3333
100.0000
71.4286
97.4910
50520
0.0000
dgrover-gatkINDELI16_PLUSmap_l100_m2_e1homalt
83.3333
100.0000
71.4286
97.4910
50520
0.0000
ndellapenna-hhgaINDELD6_15map_l250_m0_e0*
92.3077
100.0000
85.7143
97.4910
60610
0.0000
ciseli-customINDELC1_5map_l100_m2_e0*
0.0000
0.0000
8.6957
97.4918
002214
19.0476
ckim-gatkINDELI6_15map_l150_m0_e0*
87.5000
87.5000
87.5000
97.4922
71711
100.0000
jlack-gatkINDELD16_PLUSmap_l150_m0_e0*
82.3529
100.0000
70.0000
97.4937
70730
0.0000
jpowers-varprowlSNP*lowcmp_SimpleRepeat_diTR_51to200*
80.4348
88.0952
74.0000
97.4937
37537130
0.0000
ltrigg-rtg1INDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
78.6924
66.6667
96.0114
97.4973
21337140
0.0000
gduggal-bwavardINDELI1_5map_l250_m2_e1het
85.5453
95.4545
77.5000
97.4992
63362184
22.2222