PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70351-70400 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4026 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4026 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.4026 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 2 | 0 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | * | 72.7273 | 57.1429 | 100.0000 | 97.4026 | 16 | 12 | 16 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 16.6667 | 97.4026 | 0 | 0 | 1 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.4026 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.4026 | 5 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4026 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 87.3039 | 94.7368 | 80.9524 | 97.4042 | 18 | 1 | 17 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.4057 | 11 | 0 | 11 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 97.4074 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.4074 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.4074 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.4074 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 97.4074 | 8 | 0 | 7 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.4093 | 5 | 3 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.4093 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 60.0000 | 97.4093 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 97.4093 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 97.4099 | 21 | 3 | 21 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 46.1538 | 97.4104 | 0 | 0 | 6 | 7 | 1 | 14.2857 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | het | 91.7431 | 94.3396 | 89.2857 | 97.4110 | 50 | 3 | 50 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 86.2069 | 89.2857 | 83.3333 | 97.4116 | 25 | 3 | 25 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m0_e0 | het | 92.9577 | 100.0000 | 86.8421 | 97.4132 | 33 | 0 | 33 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | * | 57.5139 | 51.1475 | 65.6904 | 97.4137 | 156 | 149 | 157 | 82 | 40 | 48.7805 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m0_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.4138 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4138 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m1_e0 | het | 96.5517 | 100.0000 | 93.3333 | 97.4138 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e1 | * | 57.1429 | 50.0000 | 66.6667 | 97.4138 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4138 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.4138 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 10 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 10 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | het | 67.2352 | 94.3396 | 52.2293 | 97.4169 | 50 | 3 | 82 | 75 | 15 | 20.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.4170 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.4170 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 14.2857 | 97.4170 | 0 | 0 | 1 | 6 | 2 | 33.3333 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 90.5660 | 88.8889 | 92.3077 | 97.4181 | 24 | 3 | 24 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 69.9588 | 55.9211 | 93.4066 | 97.4184 | 85 | 67 | 85 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 97.4194 | 9 | 2 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.4194 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4194 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.4194 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |