PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
70301-70350 / 86044 show all
cchapple-customINDEL*map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.3795
2502500
bgallagher-sentieonINDELD1_5map_l150_m2_e0hetalt
92.3077
85.7143
100.0000
97.3799
61600
ndellapenna-hhgaINDELD1_5map_l150_m2_e0hetalt
92.3077
85.7143
100.0000
97.3799
61600
asubramanian-gatkINDELD16_PLUSmap_l150_m2_e0het
87.5000
87.5000
87.5000
97.3813
1421420
0.0000
ltrigg-rtg2INDELI1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
97.3822
40500
astatham-gatkINDELD1_5map_l250_m0_e0*
92.9293
100.0000
86.7925
97.3827
4604670
0.0000
ndellapenna-hhgaINDEL*map_l250_m0_e0het
91.8919
96.2264
87.9310
97.3827
5125171
14.2857
jmaeng-gatkINDEL*map_l250_m2_e0*
93.2353
95.7704
90.8309
97.3828
31714317324
12.5000
ghariani-varprowlINDEL*map_l250_m1_e0het
85.3147
96.3158
76.5690
97.3834
18371835610
17.8571
eyeh-varpipeINDELC6_15map_sirenhet
0.0000
0.0000
100.0000
97.3856
00400
dgrover-gatkINDELI16_PLUSmap_l125_m0_e0*
85.7143
100.0000
75.0000
97.3856
60620
0.0000
ckim-isaacINDELD16_PLUSmap_l150_m2_e1*
27.2727
16.6667
75.0000
97.3856
315310
0.0000
hfeng-pmm3INDELI16_PLUSmap_l150_m2_e0homalt
85.7143
100.0000
75.0000
97.3856
30310
0.0000
hfeng-pmm3INDELI16_PLUSmap_l150_m2_e1homalt
85.7143
100.0000
75.0000
97.3856
30310
0.0000
ciseli-customINDELI6_15map_l150_m1_e0*
20.6897
12.0000
75.0000
97.3856
322311
100.0000
astatham-gatkINDELD16_PLUSmap_l150_m2_e0*
94.4444
100.0000
89.4737
97.3865
1701720
0.0000
hfeng-pmm1INDELD1_5map_l150_m2_e1hetalt
93.3333
87.5000
100.0000
97.3881
71700
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
80.0000
68.1818
96.7742
97.3884
30143010
0.0000
gduggal-bwaplatINDELD16_PLUSmap_l150_m2_e0het
76.9231
62.5000
100.0000
97.3890
1061000
ckim-vqsrINDELD16_PLUSsegduphet
90.9091
100.0000
83.3333
97.3897
3703571
14.2857
ciseli-customINDELC1_5map_l125_m1_e0*
0.0000
0.0000
6.2500
97.3899
001152
13.3333
gduggal-bwaplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
20.0000
11.1111
100.0000
97.3913
324300
hfeng-pmm1INDELD1_5map_l150_m1_e0hetalt
92.3077
85.7143
100.0000
97.3913
61600
ltrigg-rtg1INDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10*
0.0000
0.0000
100.0000
97.3913
00300
hfeng-pmm2INDELI16_PLUSmap_l150_m0_e0het
80.0000
100.0000
66.6667
97.3913
20210
0.0000
jli-customINDELI6_15map_l250_m2_e0*
71.4286
62.5000
83.3333
97.3913
53511
100.0000
ckim-vqsrINDELD1_5map_l250_m1_e0het
89.2704
93.6937
85.2459
97.3920
1047104181
5.5556
ckim-vqsrSNPtvmap_l250_m2_e0homalt
31.1712
18.4632
100.0000
97.3922
17376417300
ckim-dragenINDELD1_5map_l250_m0_e0*
94.8454
100.0000
90.1961
97.3940
4604650
0.0000
ltrigg-rtg2INDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
87.5000
97.3941
001421
50.0000
ckim-gatkINDELD16_PLUSmap_l150_m2_e0het
94.1176
100.0000
88.8889
97.3951
1601620
0.0000
asubramanian-gatkINDELI1_5map_l250_m2_e1*
87.9630
83.3333
93.1373
97.3953
95199570
0.0000
jmaeng-gatkINDELD1_5map_l250_m2_e0het
91.9540
99.1736
85.7143
97.3953
1201120201
5.0000
raldana-dualsentieonINDELD1_5map_l150_m2_e0hetalt
83.3333
71.4286
100.0000
97.3958
52500
dgrover-gatkINDELD16_PLUSmap_l125_m1_e0homalt
88.8889
100.0000
80.0000
97.3958
40410
0.0000
anovak-vgINDELC1_5map_l150_m2_e0*
0.0000
0.0000
60.0000
97.3958
00320
0.0000
gduggal-snapfbINDEL*map_l250_m2_e1hetalt
54.5455
50.0000
60.0000
97.3958
33320
0.0000
ghariani-varprowlINDELI6_15map_l150_m0_e0het
44.4444
50.0000
40.0000
97.3958
22232
66.6667
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
63.5071
48.5507
91.7808
97.3961
134142134122
16.6667
dgrover-gatkINDELD16_PLUSmap_l150_m2_e1*
86.4865
88.8889
84.2105
97.3973
1621630
0.0000
jlack-gatkINDELI1_5map_l250_m2_e1*
92.8270
96.4912
89.4309
97.3985
1104110132
15.3846
ciseli-customINDELI1_5map_l250_m2_e1het
54.4118
56.0606
52.8571
97.3987
3729373326
78.7879
egarrison-hhgaINDELD1_5map_l250_m0_e0*
93.4783
93.4783
93.4783
97.4011
4334331
33.3333
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
39.1304
69.2308
97.4017
274227126
50.0000
gduggal-snapplatINDELI6_15map_l125_m2_e0homalt
11.7647
6.6667
50.0000
97.4026
114110
0.0000
gduggal-snapplatINDELI6_15map_l150_m2_e1het
10.0000
6.2500
25.0000
97.4026
115130
0.0000
ciseli-customINDELI6_15map_l125_m0_e0het
36.3636
22.2222
100.0000
97.4026
27200
ckim-dragenINDELI6_15map_l150_m0_e0het
100.0000
100.0000
100.0000
97.4026
40400
hfeng-pmm1INDELI16_PLUSsegduphetalt
100.0000
100.0000
100.0000
97.4026
40400
hfeng-pmm1INDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
97.4026
21200