PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69851-69900 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.1660 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 42.8571 | 97.1660 | 0 | 0 | 3 | 4 | 2 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m0_e0 | het | 74.0741 | 58.8235 | 100.0000 | 97.1671 | 10 | 7 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 97.1671 | 11 | 2 | 10 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 97.1671 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.1698 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 97.1698 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 97.1698 | 0 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 97.1698 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.1698 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | het | 69.4737 | 100.0000 | 53.2258 | 97.1702 | 33 | 0 | 33 | 29 | 2 | 6.8966 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 62.4672 | 47.4093 | 91.5423 | 97.1706 | 183 | 203 | 184 | 17 | 6 | 35.2941 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m0_e0 | het | 90.4110 | 100.0000 | 82.5000 | 97.1711 | 33 | 0 | 33 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 93.0233 | 100.0000 | 86.9565 | 97.1744 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.1751 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 97.1751 | 0 | 0 | 0 | 5 | 2 | 40.0000 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.1761 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 100.0000 | 42.8571 | 97.1774 | 3 | 0 | 3 | 4 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.1787 | 9 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 52.6316 | 50.0000 | 55.5556 | 97.1787 | 2 | 2 | 20 | 16 | 13 | 81.2500 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 55.5556 | 97.1787 | 0 | 0 | 5 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.1787 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.1787 | 6 | 0 | 9 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.1795 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 88.3117 | 80.9524 | 97.1429 | 97.1797 | 34 | 8 | 34 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | * | 90.1639 | 94.8276 | 85.9375 | 97.1806 | 55 | 3 | 55 | 9 | 3 | 33.3333 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 29.4118 | 97.1808 | 0 | 0 | 5 | 12 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | het | 81.0811 | 93.7500 | 71.4286 | 97.1812 | 15 | 1 | 15 | 6 | 2 | 33.3333 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 66.2942 | 51.5837 | 92.7419 | 97.1812 | 114 | 107 | 115 | 9 | 4 | 44.4444 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 68.3544 | 64.2857 | 72.9730 | 97.1820 | 27 | 15 | 27 | 10 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.0000 | 50.0000 | 50.0000 | 97.1831 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 3 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 100.0000 | 97.1831 | 0 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.1831 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 50.0000 | 50.0000 | 50.0000 | 97.1831 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 97.1831 | 4 | 1 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.1831 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 97.1831 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.1831 | 2 | 2 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.1831 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.1831 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 97.1831 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 89.6296 | 100.0000 | 81.2081 | 97.1866 | 121 | 0 | 121 | 28 | 1 | 3.5714 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 97.1875 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.1875 | 0 | 0 | 9 | 0 | 0 | ||