PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69401-69450 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.9697 | 8 | 1 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.9697 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9697 | 9 | 4 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 96.9697 | 0 | 2 | 0 | 2 | 1 | 50.0000 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.9697 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 96.9697 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.0000 | 50.0000 | 88.8889 | 96.9697 | 8 | 8 | 8 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | * | 91.8033 | 96.5517 | 87.5000 | 96.9711 | 56 | 2 | 56 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | hetalt | 85.0838 | 74.6154 | 98.9691 | 96.9725 | 97 | 33 | 96 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.6842 | 82.3529 | 66.6667 | 96.9741 | 14 | 3 | 14 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9743 | 0 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9743 | 0 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.9745 | 18 | 3 | 19 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.9748 | 18 | 0 | 18 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | het | 72.8186 | 59.0331 | 95.0041 | 96.9764 | 1160 | 805 | 1160 | 61 | 1 | 1.6393 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.4815 | 73.3333 | 91.6667 | 96.9773 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 96.9789 | 4 | 3 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 25.9259 | 96.9799 | 0 | 0 | 7 | 20 | 7 | 35.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 25.9259 | 96.9799 | 0 | 0 | 7 | 20 | 7 | 35.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 96.9799 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.2226 | 34.2857 | 81.2500 | 96.9811 | 12 | 23 | 13 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l150_m2_e1 | het | 96.7742 | 93.7500 | 100.0000 | 96.9819 | 15 | 1 | 15 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.3488 | 93.1818 | 97.6190 | 96.9828 | 41 | 3 | 41 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | segdup | hetalt | 91.3096 | 87.6923 | 95.2381 | 96.9828 | 114 | 16 | 40 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 96.9828 | 0 | 0 | 0 | 7 | 2 | 28.5714 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.9838 | 13 | 2 | 13 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.9838 | 13 | 2 | 13 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.9838 | 13 | 2 | 13 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.9838 | 13 | 2 | 13 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | het | 84.8921 | 96.7213 | 75.6410 | 96.9838 | 118 | 4 | 118 | 38 | 3 | 7.8947 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 79.6748 | 72.0588 | 89.0909 | 96.9846 | 49 | 19 | 49 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.9849 | 6 | 2 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 96.9849 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | het | 91.5888 | 92.4528 | 90.7407 | 96.9849 | 49 | 4 | 49 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.9849 | 0 | 0 | 6 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 35.9909 | 40.9326 | 32.1138 | 96.9858 | 158 | 228 | 158 | 334 | 23 | 6.8862 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 30.0000 | 96.9880 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.9880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.9880 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.9880 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9880 | 9 | 0 | 10 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.9880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 31.5789 | 96.9889 | 0 | 0 | 6 | 13 | 2 | 15.3846 | |