PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
68801-68850 / 86044 show all
qzeng-customSNP*map_l125_m0_e0hetalt
61.5385
44.4444
100.0000
96.6942
45400
qzeng-customSNPtvmap_l125_m0_e0hetalt
61.5385
44.4444
100.0000
96.6942
45400
egarrison-hhgaINDELI1_5map_l250_m2_e0het
94.6565
93.9394
95.3846
96.6955
6246230
0.0000
astatham-gatkINDELI16_PLUSmap_l125_m1_e0*
86.6667
86.6667
86.6667
96.6960
1321320
0.0000
gduggal-snapplatINDELI6_15map_l125_m2_e1*
9.3750
5.6604
27.2727
96.6967
350380
0.0000
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
82.2581
75.0000
91.0714
96.6981
51175154
80.0000
asubramanian-gatkINDELD16_PLUSmap_l100_m2_e1het
85.3739
88.2353
82.6923
96.6984
4564392
22.2222
hfeng-pmm3INDELD1_5map_l250_m0_e0het
95.6522
100.0000
91.6667
96.7003
3303330
0.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_diTR_51to200homalt
92.8571
86.6667
100.0000
96.7005
1321300
ciseli-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.0000
39.7059
96.7006
0127415
12.1951
ciseli-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
39.7059
96.7006
0127415
12.1951
gduggal-bwaplatINDELI1_5map_l100_m2_e1hetalt
71.4286
55.5556
100.0000
96.7018
25202500
dgrover-gatkINDEL*map_l250_m1_e0het
95.2880
95.7895
94.7917
96.7022
1828182101
10.0000
ckim-vqsrINDEL*segduphet
98.4343
98.6357
98.2337
96.7022
1446201446261
3.8462
dgrover-gatkINDELD16_PLUSmap_l250_m0_e0het
50.0000
100.0000
33.3333
96.7033
10120
0.0000
dgrover-gatkINDELD16_PLUSsegduphet
90.9091
100.0000
83.3333
96.7033
3703572
28.5714
eyeh-varpipeINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
0.0000
0.0000
100.0000
96.7033
00300
bgallagher-sentieonINDEL*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
96.7033
60600
cchapple-customINDELI16_PLUSmap_l100_m2_e0homalt
90.9091
100.0000
83.3333
96.7033
50511
100.0000
ckim-dragenINDELI6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
96.7033
30300
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
96.7033
22300
gduggal-snapvardINDELD1_5map_l250_m0_e0het
68.9655
100.0000
52.6316
96.7037
33050458
17.7778
jmaeng-gatkINDELI6_15map_l150_m2_e0*
85.7143
84.0000
87.5000
96.7078
2142131
33.3333
asubramanian-gatkINDELI6_15map_l150_m2_e1het
82.7586
75.0000
92.3077
96.7089
1241211
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
88.7097
80.8824
98.2143
96.7098
55135511
100.0000
cchapple-customINDELI1_5map_l250_m2_e0het
91.4729
89.3939
93.6508
96.7102
5975940
0.0000
gduggal-snapfbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
20.0000
96.7105
00143
75.0000
gduggal-snapvardINDELD1_5map_l250_m0_e0*
74.2857
100.0000
59.0909
96.7105
46065458
17.7778
ckim-gatkINDELD16_PLUSmap_l100_m2_e0homalt
90.9091
93.7500
88.2353
96.7118
1511520
0.0000
ckim-vqsrINDELD16_PLUSmap_l100_m2_e0homalt
90.9091
93.7500
88.2353
96.7118
1511520
0.0000
ckim-vqsrINDELD16_PLUSmap_l100_m2_e1het
89.5935
96.0784
83.9286
96.7136
4924794
44.4444
hfeng-pmm2INDELI6_15map_l150_m0_e0*
80.0000
75.0000
85.7143
96.7136
62611
100.0000
gduggal-snapfbINDELD1_5map_l125_m1_e0hetalt
81.8182
69.2308
100.0000
96.7136
94700
ckim-gatkSNP*map_l250_m1_e0het
72.2025
57.8759
95.9554
96.7153
2752200327521169
7.7586
gduggal-snapplatINDELI1_5map_l150_m0_e0*
81.2121
76.1364
87.0130
96.7157
13442134201
5.0000
jli-customINDELD1_5map_l125_m2_e0hetalt
84.6154
73.3333
100.0000
96.7164
1141100
eyeh-varpipeINDELI1_5segduphetalt
56.8182
41.6667
89.2857
96.7175
20282533
100.0000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_diTR_51to200*
80.0000
69.2308
94.7368
96.7185
1881810
0.0000
eyeh-varpipeINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.0000
0.0000
53.0612
96.7191
00524624
52.1739
eyeh-varpipeINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
53.0612
96.7191
00524624
52.1739
ckim-vqsrINDELI6_15map_l150_m2_e0homalt
92.3077
85.7143
100.0000
96.7213
61600
egarrison-hhgaINDELC6_15HG002complexvar*
40.0000
25.0000
100.0000
96.7213
13200
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
96.7213
60600
hfeng-pmm3INDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.7213
20200
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.7213
20200
ckim-gatkINDELI6_15map_l150_m2_e0homalt
92.3077
85.7143
100.0000
96.7213
61600
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
96.7213
22200
ciseli-customINDELD16_PLUSmap_l250_m2_e0homalt
66.6667
100.0000
50.0000
96.7213
10111
100.0000
cchapple-customINDELI16_PLUSmap_l100_m2_e1homalt
90.9091
100.0000
83.3333
96.7213
50511
100.0000
bgallagher-sentieonINDELD6_15map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
96.7213
20200