PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
68651-68700 / 86044 show all
egarrison-hhgaINDELD1_5map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
96.6245
80800
ckim-dragenINDELI16_PLUSsegdup*
100.0000
100.0000
100.0000
96.6284
4704700
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
92.3077
95.4545
89.3617
96.6284
4224250
0.0000
jmaeng-gatkINDELI6_15map_l150_m1_e0het
80.0000
80.0000
80.0000
96.6292
1231231
33.3333
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
85.7143
75.0000
100.0000
96.6292
33113300
jlack-gatkINDELI1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
96.6292
30300
jlack-gatkINDELI6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
96.6292
30300
qzeng-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
0.0000
0.0000
100.0000
96.6292
00300
qzeng-customINDELI1_5map_l125_m0_e0hetalt
66.6667
50.0000
100.0000
96.6292
22300
qzeng-customINDELI1_5map_l250_m2_e1hetalt
66.6667
50.0000
100.0000
96.6292
11300
raldana-dualsentieonINDELI16_PLUSmap_l150_m2_e0homalt
100.0000
100.0000
100.0000
96.6292
30300
raldana-dualsentieonINDELI16_PLUSmap_l150_m2_e1homalt
100.0000
100.0000
100.0000
96.6292
30300
gduggal-bwafbINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
96.6292
01033
100.0000
asubramanian-gatkINDELI6_15map_l150_m2_e1*
83.3333
74.0741
95.2381
96.6346
2072011
100.0000
egarrison-hhgaINDEL*map_l125_m0_e0hetalt
84.2105
72.7273
100.0000
96.6346
83700
rpoplin-dv42INDELD6_15map_l250_m1_e0*
100.0000
100.0000
100.0000
96.6355
1801800
gduggal-snapvardSNPtilowcmp_SimpleRepeat_triTR_51to200het
28.5714
66.6667
18.1818
96.6361
42290
0.0000
gduggal-snapplatINDELD6_15segduphet
48.4621
36.9565
70.3704
96.6376
34581981
12.5000
cchapple-customINDELC6_15lowcmp_SimpleRepeat_diTR_11to50het
0.0000
0.0000
84.3137
96.6381
004383
37.5000
ciseli-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
0.0000
0.0000
25.0000
96.6387
00130
0.0000
anovak-vgINDELD16_PLUSmap_l250_m2_e1*
66.6667
60.0000
75.0000
96.6387
32311
100.0000
ltrigg-rtg2INDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
87.5000
96.6387
00711
100.0000
raldana-dualsentieonINDELI16_PLUSsegduphetalt
100.0000
100.0000
100.0000
96.6387
40400
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
26.6667
33.8710
21.9895
96.6397
4282421495
3.3557
ltrigg-rtg1INDELI1_5segduphetalt
98.9474
97.9167
100.0000
96.6403
4715100
eyeh-varpipeINDELD1_5segduphetalt
60.7686
44.2308
97.0588
96.6403
23293311
100.0000
hfeng-pmm2INDELD6_15map_l250_m2_e0het
100.0000
100.0000
100.0000
96.6427
1401400
asubramanian-gatkSNPtimap_l150_m0_e0*
32.0231
19.0688
99.8668
96.6434
14996362149922
100.0000
ckim-dragenINDEL*map_l250_m2_e0het
92.7521
94.7619
90.8257
96.6436
19911198202
10.0000
ckim-dragenINDELD6_15map_l250_m2_e0het
96.5517
100.0000
93.3333
96.6443
1401410
0.0000
bgallagher-sentieonINDELI1_5map_l250_m0_e0homalt
94.7368
100.0000
90.0000
96.6443
90911
100.0000
hfeng-pmm2INDELD16_PLUSmap_l250_m1_e0het
75.0000
100.0000
60.0000
96.6443
30320
0.0000
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
96.6443
1501500
ckim-gatkSNPtimap_l250_m1_e0het
72.9254
58.6253
96.4523
96.6462
174012281740648
12.5000
hfeng-pmm2INDELI16_PLUSmap_l150_m1_e0*
90.9091
90.9091
90.9091
96.6463
1011010
0.0000
qzeng-customINDELD1_5map_l150_m0_e0het
83.9237
76.2376
93.3333
96.6468
154481681211
91.6667
gduggal-snapplatINDELD6_15map_l100_m1_e0hetalt
16.2162
8.8235
100.0000
96.6480
662600
cchapple-customINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
77.4037
66.6667
92.2631
96.6489
21477405
12.5000
gduggal-bwavardINDELI1_5map_l250_m2_e0*
88.1641
92.9204
83.8710
96.6505
1058104205
25.0000
qzeng-customINDELC6_15lowcmp_SimpleRepeat_diTR_11to50het
0.0000
0.0000
57.1429
96.6507
00430
0.0000
eyeh-varpipeINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
24.4444
96.6518
00113422
64.7059
astatham-gatkINDELD16_PLUSmap_l150_m2_e1het
94.1176
100.0000
88.8889
96.6543
1601620
0.0000
astatham-gatkINDELI16_PLUSmap_l125_m2_e0het
88.8889
88.8889
88.8889
96.6543
81810
0.0000
ciseli-customINDELC16_PLUS*het
0.0000
0.0000
22.2222
96.6543
00270
0.0000
asubramanian-gatkINDELD1_5map_l250_m2_e0*
86.8852
86.4130
87.3626
96.6544
15925159232
8.6957
qzeng-customINDELI1_5map_l250_m2_e0homalt
60.9137
44.4444
96.7742
96.6559
20253010
0.0000
qzeng-customINDELI1_5map_l250_m2_e1homalt
62.0591
45.6522
96.8750
96.6562
21253110
0.0000
ckim-vqsrINDELD1_5segduphet
98.9178
98.9884
98.8473
96.6564
685768680
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
0.0000
0.0000
95.4545
96.6565
002110
0.0000
ckim-gatkINDELD16_PLUSmap_l100_m2_e1het
88.7476
96.0784
82.4561
96.6569
49247104
40.0000