PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68601-68650 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 96.5909 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5909 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.5932 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | segdup | het | 96.7391 | 96.7391 | 96.7391 | 96.5939 | 89 | 3 | 89 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | map_l250_m2_e0 | het | 93.9252 | 95.7143 | 92.2018 | 96.5943 | 201 | 9 | 201 | 17 | 2 | 11.7647 | |
| ckim-dragen | INDEL | I6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5957 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 50.0000 | 0.0000 | 96.5981 | 1 | 1 | 0 | 81 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.5986 | 5 | 0 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 84.2105 | 88.8889 | 80.0000 | 96.5986 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | * | 91.6300 | 92.0354 | 91.2281 | 96.5990 | 104 | 9 | 104 | 10 | 3 | 30.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | homalt | 98.0392 | 100.0000 | 96.1538 | 96.6013 | 9 | 0 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 96.6019 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 96.6019 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m0_e0 | het | 92.7536 | 96.9697 | 88.8889 | 96.6038 | 32 | 1 | 32 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6038 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6038 | 0 | 0 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 70.3125 | 93.7500 | 56.2500 | 96.6066 | 15 | 1 | 18 | 14 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 84.2105 | 96.6071 | 0 | 0 | 32 | 6 | 2 | 33.3333 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 41.9048 | 96.6074 | 0 | 0 | 44 | 61 | 16 | 26.2295 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 41.9048 | 96.6074 | 0 | 0 | 44 | 61 | 16 | 26.2295 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.6102 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 96.6102 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 10 | 5 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6102 | 4 | 0 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 14 | 7 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.6102 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6102 | 0 | 0 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.6102 | 0 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6102 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.6102 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.6102 | 2 | 3 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.6102 | 4 | 3 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 96.6102 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6102 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6102 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | homalt | 35.0103 | 21.2197 | 100.0000 | 96.6137 | 341 | 1266 | 341 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 54.0000 | 96.6148 | 0 | 0 | 27 | 23 | 9 | 39.1304 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.5660 | 92.3077 | 88.8889 | 96.6165 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | het | 64.7498 | 67.8947 | 61.8834 | 96.6176 | 129 | 61 | 138 | 85 | 29 | 34.1176 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 90.3226 | 98.3784 | 83.4862 | 96.6186 | 182 | 3 | 182 | 36 | 1 | 2.7778 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.6197 | 10 | 1 | 12 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 46.1538 | 96.6205 | 0 | 0 | 18 | 21 | 11 | 52.3810 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 90.9091 | 96.6206 | 0 | 0 | 20 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 20.0000 | 96.6216 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6216 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 96.6216 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.6216 | 5 | 4 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6216 | 15 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 78.4615 | 96.6234 | 0 | 0 | 51 | 14 | 5 | 35.7143 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6245 | 0 | 0 | 8 | 0 | 0 | ||