PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68401-68450 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.4912 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.4912 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.4912 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | * | 45.0221 | 31.7647 | 77.2727 | 96.4912 | 27 | 58 | 17 | 5 | 1 | 20.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4912 | 0 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | * | 89.2989 | 94.1634 | 84.9123 | 96.4917 | 484 | 30 | 484 | 86 | 20 | 23.2558 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e0 | * | 69.2000 | 54.0250 | 96.2299 | 96.4918 | 1557 | 1325 | 1557 | 61 | 2 | 3.2787 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 95.5357 | 94.6903 | 96.3964 | 96.4918 | 107 | 6 | 107 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | het | 95.1872 | 96.7391 | 93.6842 | 96.4932 | 89 | 3 | 89 | 6 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l250_m2_e1 | het | 74.8760 | 64.0800 | 90.0468 | 96.4938 | 2114 | 1185 | 2117 | 234 | 196 | 83.7607 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 84.9211 | 86.9565 | 82.9787 | 96.4952 | 40 | 6 | 39 | 8 | 2 | 25.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 5.0000 | 96.4974 | 0 | 0 | 1 | 19 | 4 | 21.0526 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | het | 70.0000 | 54.9020 | 96.5517 | 96.4976 | 28 | 23 | 28 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | * | 96.0725 | 96.0725 | 96.0725 | 96.4988 | 318 | 13 | 318 | 13 | 3 | 23.0769 | |
| jmaeng-gatk | SNP | tv | map_l250_m2_e1 | * | 69.5004 | 54.3896 | 96.2379 | 96.4989 | 1586 | 1330 | 1586 | 62 | 2 | 3.2258 | |
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 85.7143 | 96.5000 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 96.5000 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 80.4196 | 96.5011 | 0 | 0 | 115 | 28 | 2 | 7.1429 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.5015 | 0 | 0 | 12 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | het | 93.2773 | 91.7355 | 94.8718 | 96.5022 | 111 | 10 | 111 | 6 | 3 | 50.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5035 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5035 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 96.5035 | 5 | 3 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | * | 90.5830 | 88.5965 | 92.6606 | 96.5053 | 101 | 13 | 101 | 8 | 4 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.5066 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 96.5066 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.5066 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | segdup | * | 77.9673 | 71.4789 | 85.7514 | 96.5099 | 1827 | 729 | 1980 | 329 | 27 | 8.2067 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 96.5116 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5116 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | hetalt | 86.4865 | 76.1905 | 100.0000 | 96.5116 | 16 | 5 | 9 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.5116 | 0 | 0 | 3 | 3 | 0 | 0.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5116 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.5116 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 96.5116 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 96.5116 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | segdup | het | 97.3199 | 99.5665 | 95.1724 | 96.5122 | 689 | 3 | 690 | 35 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | het | 87.5000 | 100.0000 | 77.7778 | 96.5170 | 37 | 0 | 35 | 10 | 2 | 20.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 96.5174 | 7 | 1 | 7 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 82.6667 | 96.5181 | 0 | 0 | 62 | 13 | 4 | 30.7692 | |
| ndellapenna-hhga | INDEL | * | map_siren | * | 97.7903 | 97.6113 | 97.9700 | 96.5183 | 7233 | 177 | 7239 | 150 | 78 | 52.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 96.5184 | 0 | 0 | 0 | 54 | 0 | 0.0000 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5184 | 18 | 0 | 18 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 96.5217 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 88.1890 | 88.8889 | 87.5000 | 96.5217 | 8 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.5217 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 96.5217 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 60.0000 | 75.0000 | 96.5217 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |