PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67951-68000 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2963 | 0 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 96.2963 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 77.7778 | 0.0000 | 96.2963 | 7 | 2 | 0 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2963 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 96.2963 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 86.2745 | 88.0000 | 84.6154 | 96.2963 | 22 | 3 | 22 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 90.0000 | 96.4286 | 84.3750 | 96.2963 | 27 | 1 | 27 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 57.1429 | 96.2963 | 0 | 0 | 4 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2963 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 96.2963 | 3 | 1 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 96.2963 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 96.2963 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 61.5385 | 50.0000 | 80.0000 | 96.2963 | 3 | 3 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 96.2963 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 96.2963 | 0 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2963 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | * | 95.7377 | 95.7377 | 95.7377 | 96.2967 | 292 | 13 | 292 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 96.1240 | 93.9394 | 98.4127 | 96.2985 | 62 | 4 | 62 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m0_e0 | * | 96.7033 | 95.6522 | 97.7778 | 96.2993 | 44 | 2 | 44 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | het | 94.5946 | 100.0000 | 89.7436 | 96.2998 | 37 | 0 | 35 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | * | 70.7317 | 54.7170 | 100.0000 | 96.3057 | 29 | 24 | 29 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | * | 70.7185 | 55.5778 | 97.1973 | 96.3060 | 4439 | 3548 | 4439 | 128 | 10 | 7.8125 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 86.6667 | 96.3066 | 0 | 0 | 104 | 16 | 6 | 37.5000 | |