PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67851-67900 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 96.2466 | 14 | 1 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 19.0476 | 12.1951 | 43.4783 | 96.2480 | 10 | 72 | 10 | 13 | 4 | 30.7692 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.2500 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.2500 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.2500 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 96.2500 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 3 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.2500 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 6 | 0 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 96.2500 | 3 | 6 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2500 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | het | 94.0849 | 93.9394 | 94.2308 | 96.2509 | 31 | 2 | 49 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 44.1860 | 96.2511 | 0 | 0 | 19 | 24 | 3 | 12.5000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.1918 | 90.9091 | 75.0000 | 96.2512 | 60 | 6 | 60 | 20 | 3 | 15.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 28.7671 | 96.2526 | 0 | 0 | 21 | 52 | 4 | 7.6923 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 77.8689 | 96.2531 | 0 | 0 | 95 | 27 | 1 | 3.7037 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.2547 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 96.9697 | 100.0000 | 94.1176 | 96.2555 | 15 | 0 | 16 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e0 | * | 93.8607 | 94.8640 | 92.8783 | 96.2572 | 314 | 17 | 313 | 24 | 6 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | homalt | 42.3333 | 26.8499 | 100.0000 | 96.2581 | 254 | 692 | 254 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.9238 | 72.7273 | 86.2745 | 96.2583 | 32 | 12 | 44 | 7 | 3 | 42.8571 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 55.1724 | 50.0000 | 61.5385 | 96.2590 | 16 | 16 | 16 | 10 | 3 | 30.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 35.2941 | 96.2596 | 0 | 0 | 12 | 22 | 5 | 22.7273 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | hetalt | 91.3043 | 91.3043 | 91.3043 | 96.2602 | 21 | 2 | 21 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | * | 94.1537 | 89.4757 | 99.3478 | 96.2604 | 2287 | 269 | 2285 | 15 | 9 | 60.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.2617 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2617 | 0 | 0 | 12 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2617 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 96.2617 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | homalt | 42.1230 | 26.6809 | 100.0000 | 96.2620 | 250 | 687 | 250 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.2745 | 84.6154 | 88.0000 | 96.2631 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.2637 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | * | segdup | het | 90.5367 | 97.4761 | 84.5196 | 96.2639 | 1429 | 37 | 1425 | 261 | 213 | 81.6092 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 84.0816 | 96.2647 | 0 | 0 | 206 | 39 | 28 | 71.7949 | |
| ltrigg-rtg2 | INDEL | C1_5 | * | * | 91.7281 | 90.0000 | 93.5238 | 96.2656 | 9 | 1 | 982 | 68 | 6 | 8.8235 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 84.2697 | 96.2668 | 0 | 0 | 75 | 14 | 5 | 35.7143 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.2675 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | segdup | * | 87.8562 | 79.5812 | 98.0519 | 96.2676 | 152 | 39 | 151 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 96.2687 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.2687 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 96.2687 | 0 | 0 | 15 | 10 | 5 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2687 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_siren | het | 91.8695 | 97.4359 | 86.9048 | 96.2700 | 76 | 2 | 73 | 11 | 2 | 18.1818 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 96.2704 | 19 | 4 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | het | 94.3590 | 96.8421 | 92.0000 | 96.2714 | 184 | 6 | 184 | 16 | 2 | 12.5000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 37.3494 | 96.2730 | 0 | 0 | 31 | 52 | 4 | 7.6923 | |