PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
67801-67850 / 86044 show all | |||||||||||||||
ckim-gatk | SNP | * | map_l250_m2_e0 | * | 70.6281 | 55.4724 | 97.1784 | 96.2246 | 4374 | 3511 | 4374 | 127 | 10 | 7.8740 | |
jlack-gatk | SNP | ti | map_l250_m0_e0 | het | 90.4950 | 97.8587 | 84.1621 | 96.2262 | 914 | 20 | 914 | 172 | 18 | 10.4651 | |
hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 96.2264 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.2264 | 0 | 0 | 2 | 0 | 0 | ||
egarrison-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
ckim-vqsr | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.2264 | 6 | 1 | 6 | 0 | 0 | ||
ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 96.2264 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 25.0000 | 0.0000 | 96.2264 | 1 | 3 | 0 | 2 | 1 | 50.0000 | |
asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.2264 | 1 | 1 | 2 | 0 | 0 | ||
qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2264 | 0 | 0 | 2 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 2 | 0 | 2 | 0 | 0 | ||
mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 96.2264 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.2264 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.2264 | 0 | 0 | 2 | 0 | 0 | ||
gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 96.2264 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
gduggal-bwaplat | INDEL | I6_15 | map_l100_m0_e0 | * | 70.5882 | 54.5455 | 100.0000 | 96.2264 | 18 | 15 | 18 | 0 | 0 | ||
ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 96.2264 | 8 | 1 | 8 | 2 | 1 | 50.0000 | |
ckim-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.2264 | 6 | 1 | 6 | 0 | 0 | ||
ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 96.2264 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.2264 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 31.5789 | 20.0000 | 75.0000 | 96.2264 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 96.2264 | 0 | 1 | 1 | 1 | 1 | 100.0000 | |
ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2264 | 0 | 0 | 4 | 0 | 0 | ||
gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 59.7222 | 96.2284 | 0 | 0 | 43 | 29 | 12 | 41.3793 | |
jmaeng-gatk | SNP | * | map_l250_m1_e0 | * | 68.9230 | 53.4340 | 97.0573 | 96.2285 | 3859 | 3363 | 3859 | 117 | 9 | 7.6923 | |
gduggal-snapfb | INDEL | C6_15 | * | * | 71.8894 | 85.7143 | 61.9048 | 96.2298 | 6 | 1 | 13 | 8 | 5 | 62.5000 | |
gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 96.2306 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | homalt | 39.7004 | 24.7664 | 100.0000 | 96.2311 | 212 | 644 | 212 | 0 | 0 | ||
ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 93.3333 | 96.2312 | 0 | 0 | 14 | 1 | 1 | 100.0000 | |
ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 93.3333 | 96.2312 | 0 | 0 | 14 | 1 | 1 | 100.0000 | |
gduggal-bwaplat | INDEL | I6_15 | segdup | het | 90.1961 | 83.1325 | 98.5714 | 96.2325 | 69 | 14 | 69 | 1 | 1 | 100.0000 | |
hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 93.0233 | 100.0000 | 86.9565 | 96.2357 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.2366 | 7 | 1 | 7 | 0 | 0 | ||
ckim-gatk | SNP | * | map_l250_m2_e1 | * | 70.8260 | 55.7155 | 97.1828 | 96.2381 | 4450 | 3537 | 4450 | 129 | 10 | 7.7519 | |
gduggal-bwaplat | INDEL | I1_5 | map_l150_m1_e0 | het | 73.4177 | 58.1940 | 99.4286 | 96.2382 | 174 | 125 | 174 | 1 | 0 | 0.0000 | |
hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.2382 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 96.2406 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
astatham-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2406 | 5 | 0 | 5 | 0 | 0 | ||
gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | * | 32.2581 | 19.2308 | 100.0000 | 96.2406 | 5 | 21 | 5 | 0 | 0 | ||
gduggal-snapvard | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 25.0000 | 96.2425 | 0 | 0 | 11 | 33 | 3 | 9.0909 | |
bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | * | 96.2963 | 97.5976 | 95.0292 | 96.2426 | 325 | 8 | 325 | 17 | 4 | 23.5294 | |
hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 92.8571 | 86.6667 | 100.0000 | 96.2428 | 13 | 2 | 13 | 0 | 0 | ||
ckim-gatk | SNP | * | map_l250_m0_e0 | homalt | 61.6062 | 44.5151 | 100.0000 | 96.2431 | 280 | 349 | 280 | 0 | 0 | ||
jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.2524 | 92.1569 | 79.3103 | 96.2435 | 47 | 4 | 46 | 12 | 4 | 33.3333 | |
eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2441 | 3 | 0 | 8 | 0 | 0 | ||
anovak-vg | INDEL | * | map_l250_m1_e0 | * | 66.8127 | 69.1803 | 64.6018 | 96.2450 | 211 | 94 | 219 | 120 | 61 | 50.8333 | |
asubramanian-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 97.4359 | 95.0000 | 100.0000 | 96.2451 | 19 | 1 | 19 | 0 | 0 | ||
jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 82.7586 | 80.0000 | 85.7143 | 96.2466 | 12 | 3 | 12 | 2 | 0 | 0.0000 |