PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67651-67700 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 96.1538 | 7 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 42.8571 | 96.1538 | 0 | 0 | 3 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.1538 | 2 | 3 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 89.6047 | 94.7368 | 85.0000 | 96.1538 | 18 | 1 | 17 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 96.1538 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.1538 | 6 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 9 | 0 | 10 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 96.1538 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 4 | 2 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 25.0000 | 0.0000 | 96.1538 | 1 | 3 | 0 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.1538 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 96.1538 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 96.1538 | 0 | 1 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 96.1538 | 0 | 1 | 0 | 2 | 0 | 0.0000 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l250_m1_e0 | * | 69.0461 | 53.5724 | 97.0891 | 96.1568 | 3869 | 3353 | 3869 | 116 | 9 | 7.7586 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 15.3846 | 96.1576 | 0 | 0 | 6 | 33 | 3 | 9.0909 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 96.1577 | 0 | 0 | 19 | 57 | 8 | 14.0351 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 84.2105 | 72.7273 | 100.0000 | 96.1585 | 32 | 12 | 32 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | * | 96.2742 | 97.5831 | 95.0000 | 96.1621 | 323 | 8 | 323 | 17 | 4 | 23.5294 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 66.6667 | 68.7500 | 64.7059 | 96.1625 | 11 | 5 | 11 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | * | 86.3271 | 94.1520 | 79.7030 | 96.1626 | 161 | 10 | 161 | 41 | 4 | 9.7561 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | het | 89.9225 | 87.8788 | 92.0635 | 96.1632 | 58 | 8 | 58 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 61.2903 | 96.1634 | 0 | 0 | 38 | 24 | 10 | 41.6667 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | het | 45.0704 | 34.0426 | 66.6667 | 96.1637 | 16 | 31 | 10 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | * | 58.8235 | 71.4286 | 50.0000 | 96.1686 | 5 | 2 | 5 | 5 | 2 | 40.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.1691 | 56 | 4 | 56 | 2 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | map_l250_m2_e0 | het | 78.8333 | 69.8969 | 90.3898 | 96.1692 | 1356 | 584 | 1345 | 143 | 116 | 81.1189 | |