PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67301-67350 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 95.9839 | 0 | 0 | 10 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | het | 95.9427 | 95.7143 | 96.1722 | 95.9846 | 201 | 9 | 201 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9854 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9854 | 11 | 1 | 11 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l250_m0_e0 | * | 73.9996 | 77.6471 | 70.6794 | 95.9856 | 594 | 171 | 593 | 246 | 53 | 21.5447 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | het | 91.7899 | 96.1538 | 87.8049 | 95.9883 | 75 | 3 | 72 | 10 | 2 | 20.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.9898 | 0 | 0 | 63 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | homalt | 92.0930 | 86.0870 | 99.0000 | 95.9920 | 99 | 16 | 99 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | * | 84.1683 | 92.9204 | 76.9231 | 95.9931 | 105 | 8 | 160 | 48 | 13 | 27.0833 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | * | 93.3423 | 94.4262 | 92.2830 | 95.9948 | 288 | 17 | 287 | 24 | 6 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | het | 58.2153 | 41.1889 | 99.2373 | 95.9951 | 1171 | 1672 | 1171 | 9 | 4 | 44.4444 | |
| hfeng-pmm3 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 95.9965 | 45 | 3 | 46 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 96.4602 | 95.9986 | 0 | 0 | 109 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 96.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.0000 | 3 | 3 | 3 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 96.0000 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 96.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.0000 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 96.0000 | 3 | 1 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | segdup | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.0000 | 2 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 96.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 96.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 92.0000 | 92.0000 | 92.0000 | 96.0000 | 23 | 2 | 23 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 96.0000 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 4 | 0 | 4 | 0 | 0 | ||