PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66851-66900 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7447 | 4 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.7447 | 0 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.7447 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | het | 78.7879 | 66.6667 | 96.2963 | 95.7447 | 52 | 26 | 52 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 95.7447 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | hetalt | 63.5897 | 46.9697 | 98.4127 | 95.7461 | 62 | 70 | 62 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 51.7369 | 92.5926 | 35.8974 | 95.7470 | 25 | 2 | 28 | 50 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 91.5493 | 95.7485 | 0 | 0 | 65 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | * | 83.3611 | 92.4528 | 75.8974 | 95.7498 | 98 | 8 | 148 | 47 | 13 | 27.6596 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | het | 75.8621 | 91.6667 | 64.7059 | 95.7500 | 22 | 2 | 22 | 12 | 6 | 50.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 95.7500 | 15 | 3 | 15 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 36.5591 | 95.7515 | 0 | 0 | 34 | 59 | 5 | 8.4746 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | * | 77.4869 | 63.2479 | 100.0000 | 95.7544 | 74 | 43 | 74 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 37.0370 | 95.7547 | 0 | 0 | 30 | 51 | 4 | 7.8431 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | homalt | 98.7013 | 98.2759 | 99.1304 | 95.7549 | 114 | 2 | 114 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | * | 95.8904 | 94.5946 | 97.2222 | 95.7558 | 315 | 18 | 315 | 9 | 3 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 95.7560 | 11 | 0 | 14 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m0_e0 | het | 93.6937 | 98.1132 | 89.6552 | 95.7571 | 104 | 2 | 104 | 12 | 3 | 25.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.7576 | 14 | 1 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.7143 | 95.7576 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | * | 93.5790 | 95.4955 | 91.7379 | 95.7583 | 318 | 15 | 322 | 29 | 3 | 10.3448 | |
| ckim-dragen | INDEL | D1_5 | segdup | het | 96.2915 | 99.7110 | 93.0988 | 95.7597 | 690 | 2 | 688 | 51 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.7602 | 0 | 0 | 58 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | * | 83.9566 | 96.2162 | 74.4681 | 95.7604 | 178 | 7 | 175 | 60 | 4 | 6.6667 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 93.6170 | 95.7619 | 0 | 0 | 44 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 95.7627 | 0 | 0 | 36 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e0 | het | 60.0000 | 60.0000 | 60.0000 | 95.7627 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.7627 | 18 | 1 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 90.1961 | 88.4615 | 92.0000 | 95.7627 | 23 | 3 | 23 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | * | 95.4265 | 96.7391 | 94.1489 | 95.7629 | 178 | 6 | 177 | 11 | 2 | 18.1818 | |
| ciseli-custom | INDEL | C6_15 | * | * | 31.2766 | 42.8571 | 24.6231 | 95.7633 | 3 | 4 | 49 | 150 | 44 | 29.3333 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | hetalt | 64.5161 | 48.0000 | 98.3607 | 95.7639 | 60 | 65 | 60 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1029 | 96.0784 | 79.6610 | 95.7645 | 49 | 2 | 47 | 12 | 4 | 33.3333 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 96.8889 | 96.4602 | 97.3214 | 95.7656 | 109 | 4 | 109 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.7672 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 41.0072 | 95.7686 | 0 | 0 | 57 | 82 | 9 | 10.9756 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 93.0748 | 91.3043 | 94.9153 | 95.7686 | 168 | 16 | 168 | 9 | 4 | 44.4444 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 90.9091 | 95.7692 | 0 | 0 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 95.7692 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.5816 | 64.2857 | 69.0476 | 95.7704 | 27 | 15 | 29 | 13 | 8 | 61.5385 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.7717 | 0 | 0 | 60 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7717 | 60 | 0 | 60 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | segdup | * | 96.3424 | 98.8654 | 93.9450 | 95.7742 | 2527 | 29 | 2529 | 163 | 11 | 6.7485 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 85.7143 | 75.0000 | 100.0000 | 95.7746 | 3 | 1 | 3 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 66.6667 | 95.7746 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.7746 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7746 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | segdup | hetalt | 61.5385 | 44.4444 | 100.0000 | 95.7746 | 4 | 5 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 95.7746 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7746 | 3 | 0 | 3 | 0 | 0 | ||