PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66651-66700 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 95.6522 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.6522 | 12 | 2 | 11 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 95.6522 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 95.6522 | 6 | 2 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.6522 | 4 | 2 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 95.6522 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 85.7143 | 75.0000 | 100.0000 | 95.6522 | 6 | 2 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 95.6522 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.6522 | 0 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 95.6522 | 8 | 1 | 8 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.6522 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 100.0000 | 95.6522 | 0 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | * | 88.8889 | 100.0000 | 80.0000 | 95.6522 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | homalt | 98.2609 | 98.2609 | 98.2609 | 95.6538 | 113 | 2 | 113 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 97.5000 | 100.0000 | 95.1220 | 95.6568 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 46.1538 | 95.6594 | 0 | 0 | 36 | 42 | 4 | 9.5238 | |
| qzeng-custom | INDEL | D1_5 | segdup | het | 98.1482 | 98.6994 | 97.6032 | 95.6595 | 683 | 9 | 733 | 18 | 4 | 22.2222 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6596 | 50 | 2 | 51 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | * | 73.9130 | 58.9974 | 98.9224 | 95.6603 | 459 | 319 | 459 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 73.9336 | 100.0000 | 58.6466 | 95.6607 | 1 | 0 | 78 | 55 | 19 | 34.5455 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 78.9474 | 93.7500 | 68.1818 | 95.6607 | 15 | 1 | 15 | 7 | 1 | 14.2857 | |
| jlack-gatk | SNP | tv | segdup | het | 96.4748 | 99.7163 | 93.4374 | 95.6607 | 5272 | 15 | 5268 | 370 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e1 | * | 96.5509 | 96.1084 | 96.9975 | 95.6629 | 1383 | 56 | 1906 | 59 | 42 | 71.1864 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 95.6633 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 96.9697 | 100.0000 | 94.1176 | 95.6633 | 15 | 0 | 16 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | * | 93.5413 | 95.4683 | 91.6905 | 95.6635 | 316 | 15 | 320 | 29 | 3 | 10.3448 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 95.6647 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.6647 | 0 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.3333 | 95.6647 | 0 | 0 | 11 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | * | 95.8652 | 94.5619 | 97.2050 | 95.6651 | 313 | 18 | 313 | 9 | 3 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m1_e0 | * | 70.7317 | 54.7170 | 100.0000 | 95.6652 | 29 | 24 | 29 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.6656 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 95.6656 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 85.7143 | 80.0000 | 92.3077 | 95.6667 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 95.6679 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 61.2245 | 55.5556 | 68.1818 | 95.6693 | 15 | 12 | 15 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.8971 | 71.2871 | 64.8148 | 95.6696 | 72 | 29 | 70 | 38 | 8 | 21.0526 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.7754 | 93.4783 | 79.2453 | 95.6699 | 43 | 3 | 42 | 11 | 4 | 36.3636 | |