PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66451-66500 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 66.6667 | 66.6667 | 95.5556 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.5556 | 10 | 1 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 80.0000 | 100.0000 | 66.6667 | 95.5556 | 3 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 89.4118 | 80.8511 | 100.0000 | 95.5556 | 38 | 9 | 2 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5556 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | het | 31.5789 | 20.0000 | 75.0000 | 95.5556 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | * | 50.0000 | 37.5000 | 75.0000 | 95.5556 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5556 | 0 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.5556 | 0 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 95.5556 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 95.5556 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e1 | * | 28.5714 | 20.0000 | 50.0000 | 95.5556 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 95.5556 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.5556 | 8 | 1 | 8 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m1_e0 | het | 95.8115 | 96.3158 | 95.3125 | 95.5556 | 183 | 7 | 183 | 9 | 2 | 22.2222 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.5556 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.5556 | 6 | 1 | 6 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m2_e0 | * | 74.3996 | 62.1406 | 92.6844 | 95.5558 | 3112 | 1896 | 3104 | 245 | 206 | 84.0816 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | * | 96.5842 | 96.1648 | 97.0072 | 95.5563 | 1354 | 54 | 1880 | 58 | 41 | 70.6897 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 93.1507 | 95.5569 | 0 | 0 | 68 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 89.4737 | 95.5582 | 0 | 0 | 68 | 8 | 3 | 37.5000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.5597 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | * | 63.5659 | 47.1264 | 97.6190 | 95.5603 | 41 | 46 | 41 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.5609 | 0 | 0 | 55 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e1 | het | 95.8333 | 97.8723 | 93.8776 | 95.5616 | 46 | 1 | 46 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.5631 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.5631 | 51 | 1 | 52 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m0_e0 | homalt | 95.8333 | 92.0000 | 100.0000 | 95.5638 | 23 | 2 | 24 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m2_e1 | * | 74.5851 | 62.3719 | 92.7460 | 95.5643 | 3166 | 1910 | 3158 | 247 | 208 | 84.2105 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 95.5645 | 9 | 0 | 10 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 15.7895 | 95.5649 | 0 | 0 | 15 | 80 | 22 | 27.5000 | |
| jmaeng-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.5665 | 18 | 3 | 18 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | segdup | het | 87.3006 | 97.2973 | 79.1667 | 95.5679 | 36 | 1 | 38 | 10 | 8 | 80.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | * | 92.1466 | 88.8889 | 95.6522 | 95.5684 | 16 | 2 | 22 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 98.8024 | 95.5691 | 0 | 0 | 165 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 87.5000 | 77.7778 | 100.0000 | 95.5696 | 7 | 2 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 61.9048 | 95.5696 | 0 | 0 | 13 | 8 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | homalt | 46.8643 | 30.6031 | 100.0000 | 95.5710 | 822 | 1864 | 821 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | het | 92.7708 | 97.3607 | 88.5942 | 95.5715 | 332 | 9 | 334 | 43 | 1 | 2.3256 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 59.2593 | 53.3333 | 66.6667 | 95.5720 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 95.5752 | 0 | 0 | 0 | 15 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | * | 91.6667 | 90.1639 | 93.2203 | 95.5752 | 275 | 30 | 275 | 20 | 6 | 30.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5752 | 0 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.5752 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.5752 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 86.6667 | 86.6667 | 86.6667 | 95.5752 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 86.6667 | 86.6667 | 86.6667 | 95.5752 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |