PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66151-66200 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | * | 92.1758 | 90.9091 | 93.4783 | 95.3892 | 130 | 13 | 129 | 9 | 1 | 11.1111 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 46.2549 | 59.2593 | 37.9310 | 95.3895 | 16 | 11 | 11 | 18 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | segdup | het | 97.6892 | 96.9926 | 98.3958 | 95.3896 | 5128 | 159 | 5091 | 83 | 12 | 14.4578 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 96.1039 | 94.8718 | 97.3684 | 95.3939 | 37 | 2 | 37 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 91.2000 | 95.3943 | 0 | 1 | 114 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 91.2000 | 95.3943 | 0 | 1 | 114 | 11 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 95.3947 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 72.7828 | 81.3725 | 65.8333 | 95.3952 | 83 | 19 | 79 | 41 | 9 | 21.9512 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 95.3975 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3975 | 11 | 0 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | segdup | * | 98.9561 | 98.7307 | 99.1826 | 95.3977 | 1089 | 14 | 1092 | 9 | 1 | 11.1111 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 54.2373 | 95.3978 | 0 | 0 | 32 | 27 | 19 | 70.3704 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | * | 93.3027 | 95.0820 | 91.5888 | 95.3992 | 290 | 15 | 294 | 27 | 3 | 11.1111 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 50.0000 | 47.8261 | 52.3810 | 95.3998 | 22 | 24 | 22 | 20 | 4 | 20.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.4000 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 55.5556 | 95.4003 | 0 | 0 | 15 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | het | 82.1372 | 96.0385 | 71.7514 | 95.4014 | 897 | 37 | 889 | 350 | 7 | 2.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4023 | 0 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 95.4023 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | * | 27.2727 | 16.6667 | 75.0000 | 95.4023 | 3 | 15 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 95.4023 | 5 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m0_e0 | * | 93.3679 | 89.7436 | 97.2973 | 95.4037 | 70 | 8 | 72 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | * | 98.0822 | 97.2826 | 98.8950 | 95.4061 | 179 | 5 | 179 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 95.4064 | 13 | 1 | 13 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.7867 | 78.5714 | 89.7436 | 95.4064 | 33 | 9 | 35 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | het | 85.7143 | 80.0000 | 92.3077 | 95.4064 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | * | 97.5135 | 99.6374 | 95.4783 | 95.4077 | 1099 | 4 | 1098 | 52 | 1 | 1.9231 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | * | 83.0171 | 95.9064 | 73.1818 | 95.4081 | 164 | 7 | 161 | 59 | 4 | 6.7797 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | * | 89.3697 | 86.3636 | 92.5926 | 95.4082 | 19 | 3 | 25 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4082 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4082 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 41.1765 | 95.4085 | 0 | 0 | 56 | 80 | 9 | 11.2500 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 59.2384 | 57.6923 | 60.8696 | 95.4092 | 15 | 11 | 14 | 9 | 5 | 55.5556 | |
| ckim-dragen | INDEL | I6_15 | map_l150_m1_e0 | het | 96.5517 | 93.3333 | 100.0000 | 95.4098 | 14 | 1 | 14 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 90.1961 | 85.1852 | 95.8333 | 95.4111 | 23 | 4 | 23 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.4128 | 20 | 0 | 20 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 95.4128 | 3 | 2 | 5 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | * | 96.2264 | 96.2264 | 96.2264 | 95.4132 | 102 | 4 | 102 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | segdup | * | 100.0000 | 100.0000 | 100.0000 | 95.4146 | 47 | 0 | 47 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 56.2500 | 95.4155 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | homalt | 97.7376 | 99.0826 | 96.4286 | 95.4155 | 108 | 1 | 108 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | * | 77.4944 | 91.1475 | 67.3986 | 95.4162 | 278 | 27 | 399 | 193 | 44 | 22.7979 | |
| astatham-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4167 | 11 | 0 | 11 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.0909 | 95.4167 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6942 | 96.6942 | 96.6942 | 95.4167 | 117 | 4 | 117 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 60.0000 | 56.2500 | 64.2857 | 95.4173 | 9 | 7 | 18 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| eyeh-varpipe | INDEL | * | map_l150_m1_e0 | * | 96.5735 | 96.1136 | 97.0378 | 95.4187 | 1286 | 52 | 1769 | 54 | 37 | 68.5185 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4198 | 6 | 0 | 6 | 0 | 0 | ||