PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66101-66150 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | * | map_l150_m2_e1 | * | 90.7203 | 94.0931 | 87.5809 | 95.3621 | 1354 | 85 | 1354 | 192 | 56 | 29.1667 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | homalt | 97.8541 | 98.2759 | 97.4359 | 95.3627 | 114 | 2 | 114 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | het | 60.8863 | 43.9547 | 99.0352 | 95.3638 | 3490 | 4450 | 3490 | 34 | 14 | 41.1765 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | het | 95.1923 | 93.8389 | 96.5854 | 95.3641 | 198 | 13 | 198 | 7 | 1 | 14.2857 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 95.3642 | 7 | 1 | 7 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 89.6552 | 86.6667 | 92.8571 | 95.3642 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 14.2857 | 95.3642 | 0 | 0 | 1 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | het | 90.1639 | 91.6667 | 88.7097 | 95.3662 | 55 | 5 | 55 | 7 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 95.3668 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3668 | 12 | 0 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 97.4212 | 99.4152 | 95.5056 | 95.3670 | 170 | 1 | 170 | 8 | 1 | 12.5000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 95.3704 | 0 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | homalt | 71.4286 | 55.5556 | 100.0000 | 95.3704 | 5 | 4 | 5 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m2_e1 | * | 78.0956 | 67.4211 | 92.7860 | 95.3708 | 1966 | 950 | 1955 | 152 | 125 | 82.2368 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.8485 | 93.3333 | 77.7778 | 95.3728 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | het | 95.9064 | 98.7952 | 93.1818 | 95.3733 | 82 | 1 | 82 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.8876 | 91.9540 | 87.9121 | 95.3737 | 80 | 7 | 80 | 11 | 4 | 36.3636 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | * | 97.8142 | 97.2826 | 98.3516 | 95.3737 | 179 | 5 | 179 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | segdup | het | 98.7941 | 98.8848 | 98.7037 | 95.3739 | 532 | 6 | 533 | 7 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 95.8333 | 100.0000 | 92.0000 | 95.3747 | 46 | 0 | 46 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3757 | 8 | 0 | 8 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 95.3757 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | het | 39.3510 | 24.5068 | 99.8029 | 95.3774 | 2025 | 6238 | 2025 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | homalt | 57.9505 | 40.7960 | 100.0000 | 95.3803 | 82 | 119 | 82 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.3804 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 91.5493 | 95.3806 | 0 | 0 | 65 | 6 | 3 | 50.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.9086 | 95.6522 | 79.6296 | 95.3807 | 44 | 2 | 43 | 11 | 4 | 36.3636 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.3811 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 51.9481 | 51.2821 | 52.6316 | 95.3827 | 20 | 19 | 20 | 18 | 3 | 16.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | het | 97.4790 | 95.8678 | 99.1453 | 95.3828 | 116 | 5 | 116 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2678 | 96.7391 | 97.8022 | 95.3842 | 178 | 6 | 178 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l125_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 95.3846 | 6 | 3 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 95.3846 | 0 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 18 | 3 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 95.4545 | 91.3043 | 100.0000 | 95.3846 | 21 | 2 | 21 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 18 | 3 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 95.3846 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.3846 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.3846 | 0 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 9 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.5926 | 95.3846 | 0 | 0 | 25 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 66.6667 | 95.3846 | 0 | 1 | 6 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 66.6667 | 95.3846 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.7746 | 91.8919 | 100.0000 | 95.3846 | 68 | 6 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 95.9184 | 100.0000 | 92.1569 | 95.3888 | 47 | 0 | 47 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 69.0619 | 63.3663 | 75.8824 | 95.3892 | 128 | 74 | 129 | 41 | 7 | 17.0732 | |