PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66051-66100 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e0 | * | 50.7042 | 33.9623 | 100.0000 | 95.3368 | 18 | 35 | 18 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 95.3368 | 9 | 1 | 9 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | segdup | hetalt | 99.3197 | 100.0000 | 98.6486 | 95.3371 | 7 | 0 | 73 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | segdup | het | 98.9797 | 99.0706 | 98.8889 | 95.3384 | 533 | 5 | 534 | 6 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 82.1333 | 73.3333 | 93.3333 | 95.3416 | 11 | 4 | 14 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | het | 94.6019 | 92.1053 | 97.2376 | 95.3423 | 175 | 15 | 176 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.3425 | 50 | 2 | 51 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m2_e0 | homalt | 97.8355 | 98.2609 | 97.4138 | 95.3432 | 113 | 2 | 113 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e1 | * | 88.0000 | 81.4815 | 95.6522 | 95.3441 | 22 | 5 | 22 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l250_m2_e0 | * | 77.9675 | 67.2797 | 92.6923 | 95.3450 | 1939 | 943 | 1928 | 152 | 125 | 82.2368 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.3451 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 56.2500 | 95.3466 | 0 | 0 | 54 | 42 | 4 | 9.5238 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 84.7368 | 95.3466 | 0 | 0 | 161 | 29 | 2 | 6.8966 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.0930 | 97.7273 | 98.4615 | 95.3472 | 43 | 1 | 64 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e0 | * | 91.0274 | 94.3892 | 87.8968 | 95.3487 | 1329 | 79 | 1329 | 183 | 52 | 28.4153 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 95.3488 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 95.3488 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 95.3488 | 1 | 0 | 3 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 95.3488 | 6 | 21 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 95.3488 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.3488 | 0 | 0 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 33.3333 | 95.3488 | 0 | 0 | 2 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.3488 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 95.3488 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.3488 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 88.8889 | 80.0000 | 100.0000 | 95.3488 | 4 | 1 | 4 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3488 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3488 | 6 | 0 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.3488 | 4 | 4 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.3488 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | het | 57.1429 | 40.0000 | 100.0000 | 95.3488 | 2 | 3 | 2 | 0 | 0 | ||
| ciseli-custom | SNP | ti | map_l250_m0_e0 | * | 69.6954 | 66.4234 | 73.3065 | 95.3499 | 910 | 460 | 909 | 331 | 59 | 17.8248 | |
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | * | 55.0840 | 38.0930 | 99.4371 | 95.3509 | 1590 | 2584 | 1590 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | het | 93.8967 | 94.7867 | 93.0233 | 95.3524 | 200 | 11 | 200 | 15 | 1 | 6.6667 | |
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | het | 95.5844 | 96.8421 | 94.3590 | 95.3527 | 184 | 6 | 184 | 11 | 2 | 18.1818 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 95.8333 | 100.0000 | 92.0000 | 95.3532 | 22 | 0 | 23 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l150_m0_e0 | het | 92.1979 | 98.2405 | 86.8557 | 95.3544 | 335 | 6 | 337 | 51 | 1 | 1.9608 | |
| gduggal-bwavard | INDEL | * | segdup | * | 89.7413 | 89.8670 | 89.6160 | 95.3552 | 2297 | 259 | 2287 | 265 | 217 | 81.8868 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e1 | hetalt | 72.2222 | 56.5217 | 100.0000 | 95.3556 | 13 | 10 | 32 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m1_e0 | * | 76.9830 | 65.9992 | 92.3526 | 95.3560 | 1747 | 900 | 1739 | 144 | 117 | 81.2500 | |
| ltrigg-rtg2 | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 100.0000 | 95.3560 | 0 | 0 | 15 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 52.6981 | 52.4613 | 52.9371 | 95.3580 | 746 | 676 | 757 | 673 | 56 | 8.3210 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 7.9208 | 4.4444 | 36.3636 | 95.3586 | 4 | 86 | 4 | 7 | 2 | 28.5714 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.3603 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3608 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3608 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3608 | 9 | 0 | 9 | 0 | 0 | ||