PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65801-65850 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.2141 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 82.3529 | 93.3333 | 73.6842 | 95.2141 | 14 | 1 | 14 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | * | 96.7136 | 97.1698 | 96.2617 | 95.2168 | 103 | 3 | 103 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 95.2174 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 61.8280 | 95.2210 | 0 | 0 | 115 | 71 | 46 | 64.7887 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 61.8280 | 95.2210 | 0 | 0 | 115 | 71 | 46 | 64.7887 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 95.2243 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.9127 | 81.8182 | 59.5238 | 95.2246 | 54 | 12 | 50 | 34 | 3 | 8.8235 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.2255 | 18 | 3 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 95.2273 | 20 | 7 | 20 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.8723 | 95.2284 | 0 | 0 | 46 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | segdup | het | 97.2973 | 97.8261 | 96.7742 | 95.2308 | 90 | 2 | 90 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | segdup | het | 98.4496 | 98.0539 | 98.8484 | 95.2313 | 16980 | 337 | 16996 | 198 | 12 | 6.0606 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | homalt | 71.5666 | 73.3945 | 69.8276 | 95.2322 | 80 | 29 | 81 | 35 | 32 | 91.4286 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | * | 96.0606 | 95.1952 | 96.9419 | 95.2325 | 317 | 16 | 317 | 10 | 3 | 30.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 60.9756 | 95.2326 | 0 | 0 | 25 | 16 | 12 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 60.9756 | 95.2326 | 0 | 0 | 25 | 16 | 12 | 75.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | het | 93.8679 | 94.7619 | 92.9907 | 95.2339 | 199 | 11 | 199 | 15 | 1 | 6.6667 | |
| ghariani-varprowl | INDEL | D6_15 | segdup | het | 76.9912 | 94.5652 | 64.9254 | 95.2347 | 87 | 5 | 87 | 47 | 45 | 95.7447 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.2381 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.2381 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.2381 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 95.2381 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.2381 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 95.2381 | 3 | 13 | 3 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 95.2381 | 3 | 13 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.2381 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 95.2381 | 0 | 0 | 1 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 42.8571 | 95.2381 | 0 | 0 | 3 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 95.2381 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 95.2381 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | * | 95.2128 | 96.7568 | 93.7173 | 95.2381 | 179 | 6 | 179 | 12 | 1 | 8.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.2381 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.2381 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 17 | 0 | 19 | 0 | 0 | ||