PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65451-65500 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 86.6667 | 86.6667 | 86.6667 | 95.0166 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 25.3333 | 95.0166 | 0 | 0 | 19 | 56 | 7 | 12.5000 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 57.7778 | 95.0166 | 0 | 0 | 26 | 19 | 9 | 47.3684 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | * | 70.5357 | 55.2448 | 97.5309 | 95.0185 | 79 | 64 | 79 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | het | 75.7831 | 61.6063 | 98.4351 | 95.0187 | 629 | 392 | 629 | 10 | 2 | 20.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 67.9245 | 95.0188 | 0 | 0 | 36 | 17 | 8 | 47.0588 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | het | 93.2292 | 94.2105 | 92.2680 | 95.0218 | 179 | 11 | 179 | 15 | 1 | 6.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 89.4737 | 100.0000 | 80.9524 | 95.0237 | 17 | 0 | 17 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.0237 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | homalt | 92.6829 | 90.4762 | 95.0000 | 95.0249 | 19 | 2 | 19 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | homalt | 97.2222 | 96.3303 | 98.1308 | 95.0256 | 105 | 4 | 105 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 69.2265 | 56.5217 | 89.2989 | 95.0257 | 481 | 370 | 484 | 58 | 10 | 17.2414 | |
| gduggal-bwaplat | INDEL | I6_15 | segdup | * | 90.0543 | 82.8571 | 98.6207 | 95.0257 | 145 | 30 | 143 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | * | segdup | het | 99.0552 | 98.7040 | 99.4090 | 95.0259 | 1447 | 19 | 1682 | 10 | 3 | 30.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | homalt | 84.8485 | 100.0000 | 73.6842 | 95.0262 | 12 | 0 | 14 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 56.5517 | 95.0274 | 0 | 0 | 82 | 63 | 11 | 17.4603 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0276 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0276 | 9 | 0 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m1_e0 | het | 80.8118 | 71.6959 | 92.5834 | 95.0292 | 613 | 242 | 749 | 60 | 29 | 48.3333 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 11.7647 | 95.0292 | 0 | 0 | 2 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 11.7647 | 95.0292 | 0 | 0 | 2 | 15 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 93.0589 | 97.5410 | 88.9706 | 95.0292 | 119 | 3 | 121 | 15 | 1 | 6.6667 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | het | 94.6524 | 93.1579 | 96.1957 | 95.0297 | 177 | 13 | 177 | 7 | 1 | 14.2857 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.0311 | 8 | 1 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 71.4286 | 95.0323 | 0 | 0 | 55 | 22 | 16 | 72.7273 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 93.0233 | 100.0000 | 86.9565 | 95.0324 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 58.6957 | 95.0324 | 0 | 0 | 27 | 19 | 9 | 47.3684 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | * | 98.7667 | 98.2059 | 99.3340 | 95.0336 | 1040 | 19 | 1044 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | * | 17.1429 | 10.3448 | 50.0000 | 95.0339 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 95.0339 | 22 | 0 | 22 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 91.5888 | 85.9649 | 98.0000 | 95.0348 | 49 | 8 | 49 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | het | 69.5652 | 78.4314 | 62.5000 | 95.0349 | 40 | 11 | 40 | 24 | 21 | 87.5000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.0355 | 7 | 0 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.0355 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 95.0355 | 4 | 1 | 4 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | * | 97.0156 | 97.8261 | 96.2185 | 95.0365 | 180 | 4 | 229 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0370 | 45 | 1 | 45 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | homalt | 95.5224 | 94.1176 | 96.9697 | 95.0376 | 32 | 2 | 32 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0378 | 44 | 1 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 67.4784 | 54.4914 | 88.5928 | 95.0381 | 825 | 689 | 831 | 107 | 16 | 14.9533 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.0403 | 0 | 0 | 80 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.0413 | 0 | 0 | 6 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.0413 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 95.0413 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.0413 | 6 | 2 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | * | 74.6667 | 59.5745 | 100.0000 | 95.0427 | 28 | 19 | 29 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 34.7826 | 47.6190 | 27.3973 | 95.0441 | 20 | 22 | 20 | 53 | 3 | 5.6604 | |
| jpowers-varprowl | INDEL | * | segdup | het | 90.0339 | 94.9523 | 85.6000 | 95.0457 | 1392 | 74 | 1391 | 234 | 206 | 88.0342 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.0472 | 0 | 0 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0484 | 44 | 1 | 44 | 2 | 2 | 100.0000 | |