PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64751-64800 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | homalt | 53.0612 | 36.1111 | 100.0000 | 94.6309 | 13 | 23 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | HG002compoundhet | het | 95.7890 | 95.7447 | 95.8333 | 94.6309 | 45 | 2 | 23 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | het | 94.7249 | 92.8803 | 96.6443 | 94.6326 | 287 | 22 | 288 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.8919 | 94.4444 | 89.4737 | 94.6328 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | het | 86.6667 | 81.2500 | 92.8571 | 94.6360 | 13 | 3 | 13 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | segdup | het | 97.9263 | 98.4679 | 97.3907 | 94.6360 | 5206 | 81 | 5188 | 139 | 6 | 4.3166 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.6360 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | segdup | hetalt | 96.0000 | 92.3077 | 100.0000 | 94.6374 | 120 | 10 | 122 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 71.0670 | 65.7439 | 77.3279 | 94.6386 | 190 | 99 | 191 | 56 | 18 | 32.1429 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | * | 77.0833 | 78.7234 | 75.5102 | 94.6389 | 37 | 10 | 37 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | SNP | * | segdup | het | 98.1974 | 97.4649 | 98.9410 | 94.6418 | 16878 | 439 | 16724 | 179 | 23 | 12.8492 | |
| ckim-gatk | SNP | tv | segdup | * | 98.7820 | 99.3671 | 98.2037 | 94.6419 | 8478 | 54 | 8474 | 155 | 6 | 3.8710 | |
| ckim-dragen | INDEL | I6_15 | segdup | het | 94.7977 | 98.7952 | 91.1111 | 94.6429 | 82 | 1 | 82 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 94.6429 | 12 | 0 | 12 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.6429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.6429 | 9 | 0 | 9 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 94.6429 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 94.6429 | 0 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 83.3333 | 94.6429 | 0 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.6429 | 6 | 3 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 53.3333 | 44.4444 | 66.6667 | 94.6429 | 12 | 15 | 12 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 94.6429 | 7 | 1 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.6429 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.6429 | 3 | 12 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 94.6445 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.6445 | 58 | 2 | 58 | 0 | 0 | ||
| ciseli-custom | INDEL | * | segdup | * | 85.0497 | 84.0767 | 86.0456 | 94.6455 | 2149 | 407 | 2152 | 349 | 240 | 68.7679 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 96.4578 | 96.1957 | 96.7213 | 94.6460 | 177 | 7 | 177 | 6 | 1 | 16.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.4444 | 56.8182 | 89.2857 | 94.6463 | 25 | 19 | 25 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | het | 98.9321 | 98.5549 | 99.3122 | 94.6465 | 682 | 10 | 722 | 5 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.6488 | 0 | 0 | 16 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l250_m2_e0 | het | 90.1205 | 89.0476 | 91.2195 | 94.6489 | 187 | 23 | 187 | 18 | 3 | 16.6667 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 90.3408 | 89.5833 | 91.1111 | 94.6492 | 43 | 5 | 41 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | homalt | 99.2221 | 98.9637 | 99.4819 | 94.6493 | 191 | 2 | 192 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | segdup | * | 99.2921 | 99.2446 | 99.3396 | 94.6513 | 1051 | 8 | 1053 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.6524 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 93.7500 | 75.0000 | 94.6524 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | segdup | homalt | 82.9294 | 75.2083 | 92.4171 | 94.6528 | 722 | 238 | 780 | 64 | 13 | 20.3125 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e1 | het | 94.6912 | 92.7445 | 96.7213 | 94.6529 | 294 | 23 | 295 | 10 | 1 | 10.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 94.6541 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 95.8387 | 97.7273 | 94.0217 | 94.6543 | 172 | 4 | 173 | 11 | 2 | 18.1818 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 96.5517 | 94.6593 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 84.6154 | 73.3333 | 100.0000 | 94.6602 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m0_e0 | * | 94.2458 | 98.4436 | 90.3915 | 94.6603 | 506 | 8 | 508 | 54 | 4 | 7.4074 | |