PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64651-64700 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 95.5357 | 96.3964 | 94.6903 | 94.5725 | 107 | 4 | 107 | 6 | 1 | 16.6667 | |
| jmaeng-gatk | INDEL | * | segdup | hetalt | 95.1613 | 90.7692 | 100.0000 | 94.5726 | 118 | 12 | 120 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.5736 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 42.8571 | 94.5736 | 0 | 0 | 3 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | * | 89.0690 | 91.6084 | 86.6667 | 94.5750 | 131 | 12 | 130 | 20 | 3 | 15.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | * | 57.1530 | 40.1263 | 99.2803 | 94.5754 | 4828 | 7204 | 4828 | 35 | 15 | 42.8571 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 94.5755 | 22 | 3 | 22 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D1_5 | segdup | * | 91.6633 | 90.7525 | 92.5926 | 94.5780 | 1001 | 102 | 1000 | 80 | 65 | 81.2500 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 88.8889 | 94.5783 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.5783 | 9 | 0 | 9 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l250_m0_e0 | het | 95.0637 | 93.8972 | 96.2596 | 94.5783 | 877 | 57 | 875 | 34 | 12 | 35.2941 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | * | 79.9475 | 72.5710 | 88.9932 | 94.5783 | 971 | 367 | 1043 | 129 | 20 | 15.5039 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | het | 74.0125 | 93.3599 | 61.3074 | 94.5783 | 1406 | 100 | 1388 | 876 | 18 | 2.0548 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.3324 | 81.3725 | 60.3960 | 94.5786 | 83 | 19 | 61 | 40 | 1 | 2.5000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7826 | 85.1485 | 66.6667 | 94.5791 | 86 | 15 | 82 | 41 | 9 | 21.9512 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e0 | homalt | 99.1379 | 100.0000 | 98.2906 | 94.5808 | 115 | 0 | 115 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | * | 95.1081 | 96.7894 | 93.4842 | 94.5833 | 1025 | 34 | 1033 | 72 | 18 | 25.0000 | |
| cchapple-custom | INDEL | D1_5 | segdup | het | 99.1458 | 98.6994 | 99.5962 | 94.5834 | 683 | 9 | 740 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 82.0513 | 84.2105 | 80.0000 | 94.5848 | 16 | 3 | 12 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | * | 50.0000 | 34.0426 | 94.1176 | 94.5860 | 16 | 31 | 16 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 91.4286 | 88.8889 | 94.1176 | 94.5860 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | * | 99.5010 | 99.3654 | 99.6370 | 94.5866 | 1096 | 7 | 1098 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5876 | 0 | 0 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | homalt | 96.8889 | 94.7826 | 99.0909 | 94.5893 | 109 | 6 | 109 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.8033 | 93.3333 | 90.3226 | 94.5899 | 28 | 2 | 28 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | * | 94.5118 | 96.7883 | 92.3398 | 94.5924 | 1326 | 44 | 1326 | 110 | 17 | 15.4545 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | het | 85.9813 | 97.8723 | 76.6667 | 94.5946 | 46 | 1 | 46 | 14 | 13 | 92.8571 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | * | 33.3333 | 25.0000 | 50.0000 | 94.5946 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5946 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 62.5000 | 94.5946 | 0 | 0 | 10 | 6 | 3 | 50.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.5946 | 2 | 1 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | segdup | homalt | 41.6667 | 26.3158 | 100.0000 | 94.5946 | 5 | 14 | 6 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 94.5946 | 1 | 1 | 0 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5946 | 0 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | het | 41.8605 | 27.2727 | 90.0000 | 94.5946 | 9 | 24 | 9 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 12 | 0 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 94.5946 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 94.5946 | 4 | 6 | 4 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5946 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.6757 | 66.6667 | 87.5000 | 94.5946 | 6 | 3 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 94.5946 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.5946 | 2 | 1 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.5946 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 94.5946 | 6 | 1 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 10 | 10 | 7 | 70.0000 | |