PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64351-64400 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4099 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | * | * | 79.7527 | 100.0000 | 66.3239 | 94.4109 | 7 | 0 | 258 | 131 | 32 | 24.4275 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.4121 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | segdup | het | 98.8075 | 98.9086 | 98.7066 | 94.4130 | 1450 | 16 | 1450 | 19 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 52.6316 | 93.7500 | 36.5854 | 94.4142 | 15 | 1 | 15 | 26 | 7 | 26.9231 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4147 | 1 | 0 | 73 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 87.5000 | 79.2453 | 97.6744 | 94.4156 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | * | 94.6067 | 92.1053 | 97.2477 | 94.4160 | 105 | 9 | 106 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | * | 95.3846 | 96.8750 | 93.9394 | 94.4162 | 31 | 1 | 31 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m1_e0 | het | 50.5747 | 34.3750 | 95.6522 | 94.4175 | 22 | 42 | 22 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 56.9106 | 85.3659 | 42.6829 | 94.4180 | 35 | 6 | 35 | 47 | 6 | 12.7660 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 94.4444 | 95.7746 | 93.1507 | 94.4190 | 68 | 3 | 68 | 5 | 1 | 20.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | het | 95.9166 | 95.8333 | 96.0000 | 94.4196 | 23 | 1 | 24 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | segdup | homalt | 99.7207 | 99.4429 | 100.0000 | 94.4210 | 357 | 2 | 357 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 53.9147 | 55.1698 | 52.7154 | 94.4211 | 715 | 581 | 728 | 653 | 58 | 8.8821 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5756 | 97.4110 | 93.8080 | 94.4224 | 301 | 8 | 303 | 20 | 1 | 5.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 94.8142 | 97.0760 | 92.6554 | 94.4234 | 166 | 5 | 164 | 13 | 1 | 7.6923 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.5377 | 97.4763 | 93.6747 | 94.4249 | 309 | 8 | 311 | 21 | 1 | 4.7619 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | het | 96.7742 | 100.0000 | 93.7500 | 94.4251 | 14 | 0 | 15 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m1_e0 | het | 94.5736 | 95.3125 | 93.8462 | 94.4254 | 61 | 3 | 61 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | SNP | ti | map_l250_m0_e0 | * | 79.9224 | 92.7007 | 70.2401 | 94.4256 | 1270 | 100 | 1258 | 533 | 20 | 3.7524 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 94.2222 | 92.1739 | 96.3636 | 94.4276 | 106 | 9 | 106 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 75.8389 | 94.4299 | 0 | 0 | 113 | 36 | 34 | 94.4444 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | * | 98.1132 | 98.9130 | 97.3262 | 94.4329 | 182 | 2 | 182 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | homalt | 95.6522 | 93.9024 | 97.4684 | 94.4347 | 154 | 10 | 154 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | D6_15 | segdup | het | 96.6292 | 93.4783 | 100.0000 | 94.4373 | 86 | 6 | 86 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.9254 | 90.1961 | 91.6667 | 94.4380 | 46 | 5 | 44 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | het | 96.7603 | 96.9697 | 96.5517 | 94.4391 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e1 | het | 86.2385 | 100.0000 | 75.8065 | 94.4395 | 47 | 0 | 47 | 15 | 11 | 73.3333 | |
| bgallagher-sentieon | INDEL | I1_5 | segdup | * | 99.2928 | 99.3390 | 99.2467 | 94.4424 | 1052 | 7 | 1054 | 8 | 2 | 25.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 94.4444 | 0 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 94.4444 | 1 | 3 | 1 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 94.4444 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.4444 | 0 | 2 | 0 | 1 | 0 | 0.0000 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.4444 | 0 | 2 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 94.4444 | 13 | 1 | 13 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 94.4444 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.4444 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.4444 | 2 | 1 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 94.4444 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.4444 | 2 | 1 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.4444 | 11 | 9 | 11 | 0 | 0 | ||