PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63651-63700 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 78.2609 | 75.0000 | 81.8182 | 93.9891 | 9 | 3 | 9 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | het | 84.4444 | 95.0000 | 76.0000 | 93.9904 | 19 | 1 | 19 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 95.1220 | 90.6977 | 100.0000 | 93.9908 | 39 | 4 | 39 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.9914 | 7 | 2 | 14 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.9937 | 57 | 3 | 57 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 47.5000 | 93.9940 | 0 | 0 | 19 | 21 | 3 | 14.2857 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.1538 | 84.6154 | 69.2308 | 93.9943 | 121 | 22 | 117 | 52 | 10 | 19.2308 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 84.9656 | 91.4894 | 79.3103 | 93.9959 | 43 | 4 | 23 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l150_m2_e1 | het | 94.3211 | 98.4848 | 90.4950 | 93.9981 | 910 | 14 | 914 | 96 | 6 | 6.2500 | |
| egarrison-hhga | INDEL | D1_5 | segdup | het | 98.1532 | 99.7110 | 96.6434 | 93.9982 | 690 | 2 | 691 | 24 | 21 | 87.5000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 94.0000 | 5 | 3 | 3 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 77.7778 | 93.3333 | 66.6667 | 94.0000 | 14 | 1 | 14 | 7 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.8800 | 87.8788 | 98.4848 | 94.0000 | 58 | 8 | 65 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.0000 | 0 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 94.0000 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.0000 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 88.8889 | 88.8889 | 94.0000 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m1_e0 | het | 33.3333 | 33.3333 | 33.3333 | 94.0000 | 1 | 2 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | hetalt | 45.0000 | 29.0323 | 100.0000 | 94.0000 | 9 | 22 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 71.4286 | 94.0000 | 0 | 0 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 94.0000 | 3 | 4 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.0000 | 12 | 2 | 12 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | * | 85.6503 | 79.4862 | 92.8508 | 94.0020 | 2104 | 543 | 2104 | 162 | 67 | 41.3580 | |
| qzeng-custom | INDEL | * | map_l150_m2_e1 | * | 81.2984 | 71.5775 | 94.0746 | 94.0057 | 1030 | 409 | 1286 | 81 | 39 | 48.1481 | |
| hfeng-pmm1 | INDEL | D6_15 | segdup | het | 96.1326 | 94.5652 | 97.7528 | 94.0067 | 87 | 5 | 87 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | het | 86.5934 | 97.5248 | 77.8656 | 94.0076 | 197 | 5 | 197 | 56 | 5 | 8.9286 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.3333 | 92.4528 | 94.2308 | 94.0092 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | * | map_l150_m2_e0 | * | 81.1578 | 71.3778 | 94.0432 | 94.0095 | 1005 | 403 | 1263 | 80 | 39 | 48.7500 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | homalt | 91.6667 | 97.0588 | 86.8421 | 94.0157 | 33 | 1 | 33 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | * | 97.4504 | 98.2857 | 96.6292 | 94.0168 | 172 | 3 | 172 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 85.7143 | 94.0171 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 94.0171 | 14 | 1 | 14 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 55.9441 | 54.7945 | 57.1429 | 94.0171 | 40 | 33 | 40 | 30 | 13 | 43.3333 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.0187 | 32 | 0 | 32 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 89.3333 | 94.3662 | 84.8101 | 94.0197 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.5233 | 92.1569 | 83.3333 | 94.0199 | 47 | 4 | 45 | 9 | 4 | 44.4444 | |
| jli-custom | INDEL | I1_5 | segdup | * | 99.3377 | 99.1501 | 99.5261 | 94.0200 | 1050 | 9 | 1050 | 5 | 2 | 40.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 95.4545 | 94.0217 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | het | 97.6596 | 98.2869 | 97.0402 | 94.0240 | 918 | 16 | 918 | 28 | 3 | 10.7143 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 94.4860 | 90.5882 | 98.7342 | 94.0242 | 77 | 8 | 78 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | segdup | * | 99.1762 | 98.9437 | 99.4099 | 94.0244 | 2529 | 27 | 2527 | 15 | 7 | 46.6667 | |