PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63601-63650 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 54.5455 | 52.9412 | 56.2500 | 93.9440 | 45 | 40 | 45 | 35 | 16 | 45.7143 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | het | 93.0233 | 93.8416 | 92.2190 | 93.9442 | 320 | 21 | 320 | 27 | 18 | 66.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | * | 75.1793 | 60.7184 | 98.6817 | 93.9453 | 524 | 339 | 524 | 7 | 1 | 14.2857 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | * | 80.7260 | 70.7025 | 94.0610 | 93.9470 | 946 | 392 | 1172 | 74 | 36 | 48.6486 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.9474 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 92.2335 | 91.3043 | 93.1818 | 93.9477 | 42 | 4 | 41 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 59.4214 | 43.1818 | 95.2381 | 93.9481 | 19 | 25 | 20 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 11.5108 | 7.7670 | 22.2222 | 93.9481 | 16 | 190 | 14 | 49 | 4 | 8.1633 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 31.5789 | 93.9490 | 0 | 0 | 6 | 13 | 4 | 30.7692 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | * | 87.9173 | 82.6718 | 93.8735 | 93.9495 | 6603 | 1384 | 6604 | 431 | 208 | 48.2599 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.0630 | 92.4242 | 100.0000 | 93.9544 | 61 | 5 | 61 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.9547 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.9581 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.9597 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9603 | 359 | 0 | 359 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | * | * | 98.9362 | 100.0000 | 97.8947 | 93.9625 | 7 | 0 | 372 | 8 | 3 | 37.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6102 | 94.2149 | 99.1304 | 93.9633 | 114 | 7 | 114 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | hetalt | 95.3488 | 97.6190 | 93.1818 | 93.9643 | 41 | 1 | 41 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5035 | 92.9825 | 98.1651 | 93.9646 | 106 | 8 | 107 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9655 | 14 | 1 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9655 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 86.9565 | 80.0000 | 95.2381 | 93.9655 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9655 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9655 | 14 | 1 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 38.9610 | 93.9655 | 0 | 0 | 30 | 47 | 29 | 61.7021 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 38.9610 | 93.9655 | 0 | 0 | 30 | 47 | 29 | 61.7021 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 93.9666 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 93.7500 | 78.9474 | 93.9683 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l150_m2_e0 | het | 94.2693 | 98.5651 | 90.3323 | 93.9690 | 893 | 13 | 897 | 96 | 6 | 6.2500 | |
| anovak-vg | INDEL | I1_5 | map_l125_m0_e0 | het | 48.1438 | 39.5833 | 61.4286 | 93.9707 | 76 | 116 | 86 | 54 | 7 | 12.9630 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | het | 85.2218 | 98.1132 | 75.3247 | 93.9718 | 104 | 2 | 174 | 57 | 14 | 24.5614 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 93.9726 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 27.5862 | 93.9734 | 0 | 0 | 40 | 105 | 8 | 7.6191 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 47.0588 | 33.3333 | 80.0000 | 93.9759 | 1 | 2 | 4 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 72.4320 | 65.5642 | 80.9069 | 93.9773 | 337 | 177 | 339 | 80 | 21 | 26.2500 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | het | 99.6380 | 99.4220 | 99.8551 | 93.9785 | 688 | 4 | 689 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m1_e0 | * | 92.8571 | 86.6667 | 100.0000 | 93.9815 | 13 | 2 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 93.9828 | 20 | 7 | 20 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m1_e0 | * | 82.6087 | 76.0000 | 90.4762 | 93.9828 | 19 | 6 | 19 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 88.2979 | 92.2222 | 84.6939 | 93.9840 | 83 | 7 | 83 | 15 | 3 | 20.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | homalt | 96.7136 | 94.4954 | 99.0385 | 93.9850 | 103 | 6 | 103 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.9850 | 8 | 2 | 16 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | het | 28.5714 | 20.0000 | 50.0000 | 93.9850 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 93.6362 | 98.9619 | 88.8545 | 93.9851 | 286 | 3 | 287 | 36 | 1 | 2.7778 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.9873 | 19 | 0 | 19 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | het | 72.4170 | 65.5172 | 80.9412 | 93.9878 | 342 | 180 | 344 | 81 | 22 | 27.1605 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 93.9879 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 91.1641 | 96.1538 | 86.6667 | 93.9880 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e0 | het | 84.6154 | 73.3333 | 100.0000 | 93.9891 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 95.4545 | 93.9891 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |