PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
63151-63200 / 86044 show all | |||||||||||||||
ndellapenna-hhga | INDEL | I6_15 | map_l125_m0_e0 | * | 93.3333 | 93.3333 | 93.3333 | 93.6709 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 93.6709 | 6 | 0 | 5 | 0 | 0 | ||
jpowers-varprowl | INDEL | D16_PLUS | segdup | homalt | 90.9091 | 83.3333 | 100.0000 | 93.6709 | 10 | 2 | 10 | 0 | 0 | ||
bgallagher-sentieon | INDEL | I16_PLUS | HG002compoundhet | het | 83.6026 | 95.7447 | 74.1935 | 93.6735 | 45 | 2 | 23 | 8 | 8 | 100.0000 | |
ndellapenna-hhga | INDEL | D1_5 | segdup | het | 98.0825 | 99.4220 | 96.7787 | 93.6753 | 688 | 4 | 691 | 23 | 18 | 78.2609 | |
qzeng-custom | SNP | * | segdup | het | 98.3153 | 98.7007 | 97.9329 | 93.6755 | 17092 | 225 | 16961 | 358 | 11 | 3.0726 | |
jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 83.8710 | 86.6667 | 81.2500 | 93.6759 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
dgrover-gatk | INDEL | * | map_l150_m0_e0 | het | 96.6534 | 97.0674 | 96.2428 | 93.6769 | 331 | 10 | 333 | 13 | 1 | 7.6923 | |
jli-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 93.6782 | 55 | 2 | 55 | 0 | 0 | ||
ckim-gatk | SNP | * | map_l150_m0_e0 | het | 75.5141 | 62.1285 | 96.2515 | 93.6797 | 4933 | 3007 | 4930 | 192 | 25 | 13.0208 | |
ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | het | 75.0000 | 80.0000 | 70.5882 | 93.6803 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
jmaeng-gatk | INDEL | * | segdup | homalt | 99.3776 | 99.7917 | 98.9669 | 93.6806 | 958 | 2 | 958 | 10 | 9 | 90.0000 | |
qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 76.0546 | 62.4277 | 97.2917 | 93.6809 | 324 | 195 | 467 | 13 | 8 | 61.5385 | |
rpoplin-dv42 | INDEL | D16_PLUS | segdup | * | 94.8276 | 94.8276 | 94.8276 | 93.6819 | 55 | 3 | 55 | 3 | 3 | 100.0000 | |
gduggal-snapplat | SNP | ti | map_l250_m2_e0 | * | 88.7392 | 83.8658 | 94.2139 | 93.6830 | 4200 | 808 | 4201 | 258 | 136 | 52.7132 | |
qzeng-custom | SNP | * | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.6842 | 12 | 8 | 12 | 0 | 0 | ||
qzeng-custom | SNP | tv | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.6842 | 12 | 8 | 12 | 0 | 0 | ||
mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 72.7273 | 80.0000 | 66.6667 | 93.6842 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
jli-custom | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 93.6842 | 24 | 0 | 24 | 0 | 0 | ||
qzeng-custom | SNP | tv | map_l150_m0_e0 | het | 79.7044 | 70.2075 | 92.1723 | 93.6869 | 1996 | 847 | 1990 | 169 | 138 | 81.6568 | |
anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | het | 77.9618 | 85.0000 | 72.0000 | 93.6869 | 17 | 3 | 18 | 7 | 5 | 71.4286 | |
hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 91.4286 | 100.0000 | 84.2105 | 93.6877 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
cchapple-custom | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6878 | 359 | 0 | 355 | 0 | 0 | ||
ltrigg-rtg1 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6879 | 359 | 0 | 356 | 0 | 0 | ||
ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 19.2308 | 93.6893 | 0 | 0 | 5 | 21 | 5 | 23.8095 | |
ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | * | 93.6170 | 93.6170 | 93.6170 | 93.6913 | 44 | 3 | 44 | 3 | 0 | 0.0000 | |
eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 50.4742 | 35.4167 | 87.8049 | 93.6923 | 17 | 31 | 36 | 5 | 3 | 60.0000 | |
ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.6937 | 7 | 7 | 7 | 0 | 0 | ||
mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | homalt | 54.5455 | 40.0000 | 85.7143 | 93.6937 | 18 | 27 | 18 | 3 | 3 | 100.0000 | |
ltrigg-rtg1 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.6937 | 7 | 2 | 7 | 0 | 0 | ||
eyeh-varpipe | INDEL | * | map_l125_m2_e0 | hetalt | 73.6278 | 59.5238 | 96.4912 | 93.6947 | 25 | 17 | 55 | 2 | 1 | 50.0000 | |
ckim-vqsr | INDEL | * | segdup | homalt | 99.3776 | 99.7917 | 98.9669 | 93.6950 | 958 | 2 | 958 | 10 | 9 | 90.0000 | |
ckim-gatk | INDEL | * | segdup | homalt | 99.3776 | 99.7917 | 98.9669 | 93.6950 | 958 | 2 | 958 | 10 | 9 | 90.0000 | |
gduggal-bwavard | SNP | tv | map_l250_m0_e0 | homalt | 97.1129 | 95.8549 | 98.4043 | 93.6955 | 185 | 8 | 185 | 3 | 2 | 66.6667 | |
ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 89.6552 | 81.2500 | 100.0000 | 93.6982 | 39 | 9 | 38 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D6_15 | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.6995 | 39 | 0 | 39 | 0 | 0 | ||
gduggal-snapplat | INDEL | I6_15 | map_siren | hetalt | 19.7183 | 11.1111 | 87.5000 | 93.7008 | 8 | 64 | 7 | 1 | 0 | 0.0000 | |
ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 95.0000 | 98.9583 | 91.3462 | 93.7008 | 190 | 2 | 190 | 18 | 5 | 27.7778 | |
gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e1 | * | 45.4545 | 50.0000 | 41.6667 | 93.7008 | 4 | 4 | 10 | 14 | 10 | 71.4286 | |
gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e1 | * | 76.5957 | 62.0690 | 100.0000 | 93.7008 | 72 | 44 | 72 | 0 | 0 | ||
gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 93.7028 | 15 | 0 | 15 | 10 | 4 | 40.0000 | |
gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e1 | het | 80.0000 | 100.0000 | 66.6667 | 93.7063 | 6 | 0 | 6 | 3 | 2 | 66.6667 | |
ckim-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.7075 | 37 | 6 | 37 | 0 | 0 | ||
ckim-vqsr | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.7075 | 37 | 6 | 37 | 0 | 0 | ||
jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 88.0734 | 90.5660 | 85.7143 | 93.7079 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
anovak-vg | SNP | * | segdup | het | 97.2290 | 97.3206 | 97.1375 | 93.7111 | 16853 | 464 | 16696 | 492 | 128 | 26.0163 | |
qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 76.1376 | 62.5235 | 97.3306 | 93.7113 | 332 | 199 | 474 | 13 | 8 | 61.5385 | |
jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | * | 79.3651 | 78.1250 | 80.6452 | 93.7120 | 25 | 7 | 25 | 6 | 6 | 100.0000 | |
dgrover-gatk | INDEL | * | segdup | homalt | 99.4292 | 99.7917 | 99.0693 | 93.7134 | 958 | 2 | 958 | 9 | 8 | 88.8889 | |
gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | het | 93.6508 | 96.7213 | 90.7692 | 93.7137 | 118 | 4 | 118 | 12 | 1 | 8.3333 |