PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63101-63150 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | homalt | 45.9770 | 29.8507 | 100.0000 | 93.6364 | 20 | 47 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 85.7143 | 93.6364 | 0 | 0 | 18 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6364 | 7 | 0 | 7 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 100.0000 | 93.6364 | 0 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.7143 | 77.2727 | 96.2264 | 93.6375 | 51 | 15 | 51 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | map_l150_m2_e1 | het | 50.9949 | 42.2713 | 64.2553 | 93.6383 | 134 | 183 | 151 | 84 | 8 | 9.5238 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 16.6667 | 93.6386 | 0 | 0 | 22 | 110 | 38 | 34.5455 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 88.2353 | 93.6395 | 0 | 0 | 165 | 22 | 14 | 63.6364 | |
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | * | 93.6877 | 92.6277 | 94.7722 | 93.6399 | 1269 | 101 | 1269 | 70 | 31 | 44.2857 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e0 | hetalt | 53.6585 | 36.6667 | 100.0000 | 93.6416 | 11 | 19 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | segdup | homalt | 95.6522 | 91.6667 | 100.0000 | 93.6416 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m0_e0 | het | 93.6867 | 98.2964 | 89.4900 | 93.6438 | 577 | 10 | 579 | 68 | 2 | 2.9412 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | * | 95.6975 | 95.9477 | 95.4486 | 93.6441 | 734 | 31 | 734 | 35 | 5 | 14.2857 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 13.3333 | 93.6441 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | het | 66.9093 | 62.8035 | 71.5895 | 93.6451 | 569 | 337 | 572 | 227 | 132 | 58.1498 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 94.1176 | 97.5610 | 90.9091 | 93.6462 | 80 | 2 | 80 | 8 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.0060 | 94.7368 | 99.3865 | 93.6477 | 162 | 9 | 162 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 3.5430 | 9.8039 | 2.1622 | 93.6492 | 5 | 46 | 4 | 181 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | * | 87.2444 | 81.6810 | 93.6211 | 93.6506 | 5899 | 1323 | 5900 | 402 | 193 | 48.0100 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | * | 22.8571 | 14.8148 | 50.0000 | 93.6508 | 4 | 23 | 4 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6508 | 8 | 0 | 8 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6508 | 4 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l150_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 93.6508 | 2 | 6 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 74.0849 | 62.1622 | 91.6667 | 93.6508 | 23 | 14 | 22 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 38.6555 | 85.1852 | 25.0000 | 93.6508 | 23 | 4 | 2 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.6508 | 20 | 0 | 20 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 93.6508 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 93.6508 | 4 | 2 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 93.6508 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| ckim-gatk | SNP | tv | map_l250_m1_e0 | homalt | 60.1307 | 42.9907 | 100.0000 | 93.6519 | 368 | 488 | 368 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | * | 91.3043 | 84.0000 | 100.0000 | 93.6556 | 21 | 4 | 21 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | homalt | 63.7890 | 46.8310 | 100.0000 | 93.6576 | 133 | 151 | 133 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | segdup | * | 98.5236 | 99.2803 | 97.7783 | 93.6584 | 27865 | 202 | 27859 | 633 | 14 | 2.2117 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 93.6585 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 53.8462 | 93.6585 | 0 | 0 | 7 | 6 | 1 | 16.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | homalt | 55.8824 | 41.3043 | 86.3636 | 93.6599 | 19 | 27 | 19 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | * | segdup | homalt | 99.1667 | 99.1667 | 99.1667 | 93.6609 | 952 | 8 | 952 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 16.6667 | 93.6609 | 0 | 0 | 20 | 100 | 35 | 35.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | het | 94.1851 | 95.8333 | 92.5926 | 93.6620 | 23 | 1 | 25 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | * | segdup | homalt | 99.4292 | 99.7917 | 99.0693 | 93.6623 | 958 | 2 | 958 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 93.6639 | 22 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6667 | 19 | 0 | 19 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l250_m0_e0 | het | 97.2742 | 98.3400 | 96.2313 | 93.6672 | 1481 | 25 | 1481 | 58 | 7 | 12.0690 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | * | 92.0000 | 88.4615 | 95.8333 | 93.6675 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | * | 95.4584 | 94.5667 | 96.3671 | 93.6675 | 2019 | 116 | 2016 | 76 | 21 | 27.6316 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 57.4870 | 54.9296 | 60.2941 | 93.6685 | 39 | 32 | 41 | 27 | 5 | 18.5185 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | het | 93.1419 | 97.6589 | 89.0244 | 93.6692 | 292 | 7 | 292 | 36 | 9 | 25.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | het | 88.8889 | 100.0000 | 80.0000 | 93.6709 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 93.6709 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 93.6709 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |