PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62151-62200 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I16_PLUS | map_siren | het | 95.9184 | 95.9184 | 95.9184 | 92.9900 | 47 | 2 | 47 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 92.9936 | 0 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.8897 | 76.2238 | 90.8333 | 92.9947 | 109 | 34 | 109 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.0323 | 74.2424 | 84.4828 | 92.9952 | 49 | 17 | 49 | 9 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.9952 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 92.9961 | 36 | 5 | 36 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.9961 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 92.9961 | 36 | 5 | 36 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | * | 97.1429 | 100.0000 | 94.4444 | 92.9961 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | segdup | homalt | 99.8605 | 99.7214 | 100.0000 | 92.9966 | 358 | 1 | 355 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | homalt | 95.0000 | 95.0000 | 95.0000 | 92.9988 | 57 | 3 | 57 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 71.4286 | 93.0000 | 0 | 0 | 5 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m0_e0 | * | 85.7143 | 85.7143 | 85.7143 | 93.0000 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | het | 92.9378 | 89.3939 | 96.7742 | 93.0023 | 59 | 7 | 60 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | * | 96.5778 | 97.6744 | 95.5056 | 93.0031 | 84 | 2 | 85 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | hetalt | 60.3494 | 49.1935 | 78.0488 | 93.0034 | 61 | 63 | 32 | 9 | 5 | 55.5556 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | het | 48.7652 | 32.7869 | 95.1220 | 93.0034 | 40 | 82 | 39 | 2 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.3920 | 94.7368 | 77.7251 | 93.0040 | 144 | 8 | 164 | 47 | 4 | 8.5106 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | het | 95.6234 | 94.9676 | 96.2882 | 93.0044 | 1321 | 70 | 1323 | 51 | 5 | 9.8039 | |
| ckim-dragen | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.0057 | 37 | 6 | 37 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | hetalt | 96.1039 | 92.5000 | 100.0000 | 93.0057 | 37 | 3 | 37 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.3233 | 60.7843 | 72.9730 | 93.0057 | 31 | 20 | 27 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | het | 77.4539 | 63.6364 | 98.9362 | 93.0060 | 91 | 52 | 93 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | het | 93.3333 | 93.3333 | 93.3333 | 93.0070 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | segdup | * | 98.7191 | 99.3671 | 98.0796 | 93.0076 | 8478 | 54 | 8478 | 166 | 14 | 8.4337 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 93.0097 | 36 | 5 | 36 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdup | het | 98.6970 | 98.5675 | 98.8268 | 93.0098 | 1445 | 21 | 1432 | 17 | 2 | 11.7647 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 93.0108 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | * | 81.9440 | 76.5957 | 88.0952 | 93.0116 | 36 | 11 | 37 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | hetalt | 44.4444 | 28.5714 | 100.0000 | 93.0147 | 14 | 35 | 19 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | map_l250_m2_e0 | het | 87.1650 | 97.8052 | 78.6127 | 93.0154 | 5080 | 114 | 5032 | 1369 | 34 | 2.4836 | |
| jpowers-varprowl | INDEL | D1_5 | segdup | homalt | 94.4928 | 90.8078 | 98.4894 | 93.0154 | 326 | 33 | 326 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | * | 96.5517 | 95.8904 | 97.2222 | 93.0165 | 70 | 3 | 70 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e1 | het | 72.9246 | 57.6211 | 99.2964 | 93.0175 | 4234 | 3114 | 4234 | 30 | 5 | 16.6667 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 39.0387 | 28.0303 | 64.2857 | 93.0175 | 37 | 95 | 36 | 20 | 6 | 30.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 70.5199 | 59.6244 | 86.2876 | 93.0181 | 508 | 344 | 516 | 82 | 38 | 46.3415 | |
| gduggal-snapfb | INDEL | * | map_siren | hetalt | 66.5492 | 57.0850 | 79.7753 | 93.0196 | 141 | 106 | 71 | 18 | 14 | 77.7778 | |
| jlack-gatk | SNP | tv | map_l250_m0_e0 | homalt | 97.1429 | 96.8912 | 97.3958 | 93.0207 | 187 | 6 | 187 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | homalt | 92.0987 | 86.9565 | 97.8873 | 93.0221 | 100 | 15 | 139 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | homalt | 86.3737 | 80.0995 | 93.7143 | 93.0223 | 161 | 40 | 164 | 11 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 93.0233 | 0 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 9 | 0 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.0233 | 3 | 1 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 6 | 0 | 6 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 88.8889 | 88.8889 | 88.8889 | 93.0233 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 93.0233 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 93.0233 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.0233 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.0233 | 7 | 2 | 9 | 0 | 0 | ||