PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62051-62100 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 92.9124 | 57 | 3 | 55 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | het | 87.4417 | 97.6415 | 79.1712 | 92.9128 | 2898 | 70 | 2885 | 759 | 20 | 2.6351 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | * | 99.1335 | 98.5494 | 99.7245 | 92.9129 | 1087 | 16 | 1086 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | het | 65.0768 | 88.4615 | 51.4706 | 92.9130 | 69 | 9 | 70 | 66 | 34 | 51.5152 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | homalt | 99.3671 | 99.5772 | 99.1579 | 92.9136 | 471 | 2 | 471 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 89.7493 | 83.4297 | 97.1047 | 92.9146 | 433 | 86 | 436 | 13 | 1 | 7.6923 | |
| ltrigg-rtg2 | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9151 | 1 | 0 | 131 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 33.3333 | 100.0000 | 20.0000 | 92.9178 | 5 | 0 | 5 | 20 | 4 | 20.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 62.5473 | 53.3333 | 75.6098 | 92.9188 | 8 | 7 | 31 | 10 | 1 | 10.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m1_e0 | het | 86.3636 | 97.4359 | 77.5510 | 92.9191 | 38 | 1 | 38 | 11 | 11 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m1_e0 | het | 90.8397 | 94.4444 | 87.5000 | 92.9204 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 82.7942 | 81.6901 | 83.9286 | 92.9204 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| hfeng-pmm3 | SNP | ti | map_l250_m0_e0 | * | 98.5053 | 98.6131 | 98.3977 | 92.9205 | 1351 | 19 | 1351 | 22 | 3 | 13.6364 | |
| ltrigg-rtg1 | INDEL | * | segdup | homalt | 99.6351 | 99.5833 | 99.6868 | 92.9210 | 956 | 4 | 955 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 94.0671 | 98.5507 | 89.9736 | 92.9238 | 340 | 5 | 341 | 38 | 1 | 2.6316 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.9245 | 14 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.9245 | 30 | 5 | 30 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.9245 | 30 | 5 | 30 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.9245 | 30 | 5 | 30 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | segdup | homalt | 99.4731 | 99.7886 | 99.1597 | 92.9261 | 472 | 1 | 472 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.9293 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | het | 40.8163 | 28.5714 | 71.4286 | 92.9293 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.9293 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l250_m0_e0 | * | 98.1512 | 98.2201 | 98.0823 | 92.9304 | 2097 | 38 | 2097 | 41 | 9 | 21.9512 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 92.9339 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m0_e0 | het | 97.6415 | 96.2151 | 99.1108 | 92.9345 | 1449 | 57 | 1449 | 13 | 3 | 23.0769 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | * | 93.5343 | 97.8966 | 89.5442 | 92.9358 | 7819 | 168 | 7819 | 913 | 69 | 7.5575 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | homalt | 99.8833 | 100.0000 | 99.7669 | 92.9359 | 436 | 0 | 428 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.9379 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6301 | 98.6301 | 98.6301 | 92.9400 | 72 | 1 | 72 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.8217 | 78.3217 | 97.3913 | 92.9405 | 112 | 31 | 112 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.9412 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.9412 | 6 | 0 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | segdup | hetalt | 61.5385 | 44.4444 | 100.0000 | 92.9412 | 4 | 5 | 6 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 58.7127 | 55.0000 | 62.9630 | 92.9412 | 33 | 27 | 34 | 20 | 4 | 20.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.9412 | 18 | 1 | 18 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | het | 54.7945 | 80.0000 | 41.6667 | 92.9412 | 4 | 1 | 10 | 14 | 10 | 71.4286 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.9435 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.9726 | 98.4586 | 95.5307 | 92.9472 | 511 | 8 | 513 | 24 | 3 | 12.5000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.2039 | 90.5660 | 96.0000 | 92.9478 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | homalt | 97.6744 | 100.0000 | 95.4545 | 92.9487 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | hetalt | 84.8684 | 75.0000 | 97.7273 | 92.9487 | 63 | 21 | 43 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | hetalt | 58.8235 | 43.4783 | 90.9091 | 92.9487 | 10 | 13 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | het | 98.0731 | 98.0080 | 98.1383 | 92.9489 | 1476 | 30 | 1476 | 28 | 1 | 3.5714 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | het | 84.6379 | 80.8799 | 88.7622 | 92.9498 | 478 | 113 | 545 | 69 | 16 | 23.1884 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m1_e0 | * | 96.7742 | 100.0000 | 93.7500 | 92.9515 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | segdup | * | 99.4540 | 99.1840 | 99.7255 | 92.9516 | 1094 | 9 | 1090 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m0_e0 | * | 98.2865 | 98.3942 | 98.1792 | 92.9532 | 1348 | 22 | 1348 | 25 | 5 | 20.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | * | 53.6585 | 39.8792 | 81.9876 | 92.9540 | 132 | 199 | 132 | 29 | 21 | 72.4138 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | * | 96.2251 | 96.4981 | 95.9538 | 92.9541 | 496 | 18 | 498 | 21 | 4 | 19.0476 | |