PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61651-61700 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.5177 | 64.5833 | 90.9091 | 92.6829 | 31 | 17 | 30 | 3 | 2 | 66.6667 | |
| qzeng-custom | SNP | * | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 12 | 8 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 92.6829 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m1_e0 | het | 80.0000 | 100.0000 | 66.6667 | 92.6829 | 6 | 0 | 6 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 12 | 0 | 12 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 92.6829 | 6 | 0 | 6 | 6 | 2 | 33.3333 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.6829 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 92.6829 | 0 | 1 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 92.6829 | 0 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 92.6829 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.6829 | 2 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.0289 | 93.0070 | 99.2537 | 92.6856 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | * | 96.1418 | 97.0817 | 95.2199 | 92.6863 | 499 | 15 | 498 | 25 | 4 | 16.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | homalt | 95.4651 | 91.8798 | 99.3415 | 92.6863 | 2263 | 200 | 2263 | 15 | 9 | 60.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 92.6874 | 40 | 3 | 40 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l250_m0_e0 | homalt | 98.8924 | 99.3641 | 98.4252 | 92.6877 | 625 | 4 | 625 | 10 | 5 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e0 | het | 95.4980 | 98.1308 | 93.0027 | 92.6879 | 1365 | 26 | 1369 | 103 | 7 | 6.7961 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.6893 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | * | 93.2137 | 94.3182 | 92.1348 | 92.6899 | 166 | 10 | 164 | 14 | 4 | 28.5714 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 95.3476 | 98.1168 | 92.7305 | 92.6905 | 521 | 10 | 523 | 41 | 4 | 9.7561 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.6923 | 19 | 0 | 19 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | segdup | * | 89.9918 | 90.8571 | 89.1429 | 92.6931 | 159 | 16 | 156 | 19 | 4 | 21.0526 | |
| qzeng-custom | INDEL | * | map_l125_m1_e0 | hetalt | 87.3239 | 77.5000 | 100.0000 | 92.6941 | 31 | 9 | 16 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | segdup | het | 97.4023 | 99.5594 | 95.3366 | 92.6943 | 11977 | 53 | 11980 | 586 | 2 | 0.3413 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 88.6513 | 85.7977 | 91.7012 | 92.6948 | 441 | 73 | 442 | 40 | 4 | 10.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.5055 | 93.4783 | 95.5556 | 92.6948 | 43 | 3 | 43 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.9301 | 58.8235 | 86.2069 | 92.6952 | 30 | 21 | 25 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m0_e0 | * | 72.0000 | 75.0000 | 69.2308 | 92.6966 | 6 | 2 | 9 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | het | 89.2857 | 83.3333 | 96.1538 | 92.6966 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.7143 | 80.0000 | 92.3077 | 92.6966 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1702 | 96.5812 | 95.7627 | 92.6980 | 113 | 4 | 113 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.0000 | 92.7007 | 0 | 0 | 3 | 7 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 92.0635 | 87.8788 | 96.6667 | 92.7007 | 29 | 4 | 29 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | * | 82.1730 | 92.2179 | 74.1015 | 92.7012 | 474 | 40 | 701 | 245 | 50 | 20.4082 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7192 | 97.1591 | 98.2857 | 92.7023 | 171 | 5 | 172 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I16_PLUS | segdup | het | 78.0488 | 66.6667 | 94.1176 | 92.7039 | 16 | 8 | 16 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 92.7039 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | * | 95.2938 | 98.5261 | 92.2669 | 92.7054 | 869 | 13 | 871 | 73 | 6 | 8.2192 | |
| jli-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 92.7083 | 28 | 1 | 28 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | het | 71.5733 | 55.9315 | 99.3606 | 92.7084 | 3885 | 3061 | 3885 | 25 | 5 | 20.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | het | 46.6926 | 31.5789 | 89.5522 | 92.7095 | 60 | 130 | 60 | 7 | 1 | 14.2857 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e1 | * | 97.6471 | 97.6471 | 97.6471 | 92.7101 | 83 | 2 | 83 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m0_e0 | het | 96.8767 | 94.6467 | 99.2144 | 92.7117 | 884 | 50 | 884 | 7 | 2 | 28.5714 | |