PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61351-61400 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.4528 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.4528 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4528 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.4528 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.4528 | 6 | 0 | 6 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.4528 | 7 | 2 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.7959 | 81.4815 | 100.0000 | 92.4528 | 22 | 5 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.4528 | 25 | 2 | 20 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | hetalt | 46.6253 | 31.0606 | 93.4579 | 92.4542 | 41 | 91 | 100 | 7 | 5 | 71.4286 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | homalt | 92.3386 | 88.6364 | 96.3636 | 92.4554 | 39 | 5 | 53 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 90.3207 | 98.8506 | 83.1461 | 92.4567 | 516 | 6 | 518 | 105 | 4 | 3.8095 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 93.7008 | 92.4584 | 0 | 0 | 119 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 49.5193 | 78.0488 | 36.2637 | 92.4606 | 32 | 9 | 33 | 58 | 18 | 31.0345 | |
| ciseli-custom | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 47.0588 | 92.4612 | 0 | 0 | 16 | 18 | 2 | 11.1111 | |
| rpoplin-dv42 | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 92.4632 | 81 | 2 | 81 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | segdup | homalt | 97.4948 | 97.2917 | 97.6987 | 92.4653 | 934 | 26 | 934 | 22 | 21 | 95.4545 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m1_e0 | * | 96.0363 | 96.2343 | 95.8391 | 92.4668 | 690 | 27 | 691 | 30 | 4 | 13.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 92.4672 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4731 | 8 | 0 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | hetalt | 63.6364 | 46.6667 | 100.0000 | 92.4731 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 42.4242 | 26.9231 | 100.0000 | 92.4731 | 7 | 19 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 42.4242 | 26.9231 | 100.0000 | 92.4731 | 7 | 19 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | het | 97.0874 | 94.3396 | 100.0000 | 92.4739 | 100 | 6 | 101 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | het | 95.6747 | 95.2060 | 96.1480 | 92.4743 | 1271 | 64 | 1273 | 51 | 5 | 9.8039 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e1 | het | 94.8905 | 96.2963 | 93.5252 | 92.4743 | 130 | 5 | 130 | 9 | 2 | 22.2222 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | het | 92.6168 | 93.8422 | 91.4229 | 92.4770 | 1844 | 121 | 1844 | 173 | 34 | 19.6532 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | het | 95.3815 | 98.4903 | 92.4630 | 92.4771 | 1370 | 21 | 1374 | 112 | 7 | 6.2500 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e1 | * | 90.3178 | 92.5453 | 88.1950 | 92.4782 | 3476 | 280 | 3474 | 465 | 216 | 46.4516 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | homalt | 60.9137 | 51.7241 | 74.0741 | 92.4791 | 60 | 56 | 60 | 21 | 20 | 95.2381 | |
| raldana-dualsentieon | INDEL | I1_5 | segdup | homalt | 99.4720 | 99.5772 | 99.3671 | 92.4798 | 471 | 2 | 471 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | * | 84.4218 | 78.4473 | 91.3813 | 92.4805 | 677 | 186 | 774 | 73 | 17 | 23.2877 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.4812 | 20 | 0 | 20 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.0492 | 67.3267 | 95.7143 | 92.4812 | 68 | 33 | 67 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | homalt | 31.2233 | 18.4997 | 100.0000 | 92.4835 | 730 | 3216 | 730 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.4837 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | homalt | 97.4326 | 95.8716 | 99.0453 | 92.4843 | 418 | 18 | 415 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 91.2281 | 89.6552 | 92.8571 | 92.4866 | 78 | 9 | 78 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | SNP | * | map_l250_m0_e0 | het | 96.7528 | 96.9456 | 96.5608 | 92.4896 | 1460 | 46 | 1460 | 52 | 1 | 1.9231 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.3077 | 90.0000 | 94.7368 | 92.4901 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.4901 | 38 | 2 | 38 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 92.4908 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | hetalt | 81.4312 | 72.0930 | 93.5484 | 92.4939 | 31 | 12 | 29 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | * | 70.7071 | 66.0377 | 76.0870 | 92.4959 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.5000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5000 | 3 | 3 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.5000 | 6 | 0 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 66.6667 | 66.6667 | 66.6667 | 92.5000 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | hetalt | 33.3333 | 22.2222 | 66.6667 | 92.5000 | 2 | 7 | 2 | 1 | 0 | 0.0000 | |