PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61201-61250 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | het | 94.4053 | 97.9293 | 91.1260 | 92.3124 | 5155 | 109 | 5155 | 502 | 85 | 16.9323 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1456 | 96.0784 | 94.2308 | 92.3134 | 98 | 4 | 98 | 6 | 3 | 50.0000 | |
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | * | 43.7760 | 28.0314 | 99.8714 | 92.3134 | 3107 | 7977 | 3107 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e1 | het | 95.6493 | 95.5844 | 95.7143 | 92.3154 | 736 | 34 | 737 | 33 | 3 | 9.0909 | |
| astatham-gatk | SNP | * | map_l250_m2_e1 | het | 89.3080 | 81.4020 | 98.9151 | 92.3164 | 4285 | 979 | 4285 | 47 | 12 | 25.5319 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 92.0152 | 94.5312 | 89.6296 | 92.3164 | 121 | 7 | 121 | 14 | 2 | 14.2857 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 49.0421 | 92.7536 | 33.3333 | 92.3171 | 64 | 5 | 63 | 126 | 5 | 3.9683 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | het | 96.6667 | 95.0820 | 98.3051 | 92.3177 | 58 | 3 | 58 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | segdup | * | 95.7518 | 94.7966 | 96.7265 | 92.3178 | 2423 | 133 | 2423 | 82 | 67 | 81.7073 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | homalt | 86.3828 | 79.7980 | 94.1520 | 92.3181 | 158 | 40 | 161 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 94.7368 | 92.3077 | 97.2973 | 92.3183 | 108 | 9 | 108 | 3 | 1 | 33.3333 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 92.3203 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 92.3205 | 46 | 2 | 46 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.0662 | 84.6154 | 62.7586 | 92.3219 | 187 | 34 | 182 | 108 | 16 | 14.8148 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.2963 | 95.1220 | 97.5000 | 92.3225 | 39 | 2 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.4865 | 91.4286 | 82.0513 | 92.3228 | 32 | 3 | 32 | 7 | 6 | 85.7143 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | het | 95.1903 | 97.7872 | 92.7278 | 92.3245 | 3226 | 73 | 3226 | 253 | 51 | 20.1581 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 95.1124 | 96.0396 | 94.2029 | 92.3248 | 194 | 8 | 195 | 12 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | map_l250_m0_e0 | homalt | 78.0848 | 77.2655 | 78.9216 | 92.3251 | 486 | 143 | 483 | 129 | 86 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.0588 | 94.2857 | 100.0000 | 92.3256 | 33 | 2 | 33 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 92.3274 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m1_e0 | homalt | 94.7368 | 94.7368 | 94.7368 | 92.3284 | 54 | 3 | 54 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | homalt | 94.7368 | 93.1034 | 96.4286 | 92.3288 | 27 | 2 | 27 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 92.1176 | 88.6792 | 95.8333 | 92.3323 | 47 | 6 | 46 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.3328 | 47 | 0 | 47 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 49.1660 | 39.1892 | 65.9574 | 92.3328 | 29 | 45 | 31 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e1 | * | 85.7143 | 77.7778 | 95.4545 | 92.3345 | 21 | 6 | 21 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e1 | het | 93.5587 | 94.0919 | 93.0316 | 92.3350 | 4953 | 311 | 4953 | 371 | 90 | 24.2588 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | het | 81.9515 | 96.3612 | 71.2908 | 92.3358 | 5005 | 189 | 4954 | 1995 | 92 | 4.6115 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 94.0622 | 98.2283 | 90.2351 | 92.3365 | 499 | 9 | 499 | 54 | 18 | 33.3333 | |
| ckim-isaac | INDEL | I6_15 | segdup | het | 93.9024 | 92.7711 | 95.0617 | 92.3368 | 77 | 6 | 77 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.3372 | 19 | 0 | 20 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | segdup | het | 98.5285 | 99.3516 | 97.7189 | 92.3400 | 11952 | 78 | 11952 | 279 | 6 | 2.1505 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 94.0741 | 96.9466 | 91.3669 | 92.3416 | 127 | 4 | 127 | 12 | 2 | 16.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | hetalt | 78.6144 | 75.8929 | 81.5385 | 92.3439 | 85 | 27 | 53 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 16.7513 | 92.3465 | 0 | 0 | 33 | 164 | 45 | 27.4390 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m0_e0 | * | 92.0635 | 87.8788 | 96.6667 | 92.3469 | 29 | 4 | 29 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 75.0932 | 68.8312 | 82.6087 | 92.3470 | 530 | 240 | 532 | 112 | 24 | 21.4286 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.3483 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | het | 91.8033 | 84.8485 | 100.0000 | 92.3483 | 28 | 5 | 29 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | segdup | homalt | 95.2381 | 100.0000 | 90.9091 | 92.3505 | 50 | 0 | 50 | 5 | 5 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.3513 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.6959 | 96.3636 | 99.0654 | 92.3517 | 106 | 4 | 106 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | het | 94.8545 | 91.4692 | 98.5000 | 92.3518 | 193 | 18 | 197 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | homalt | 81.8078 | 70.7746 | 96.9163 | 92.3518 | 201 | 83 | 220 | 7 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | map_l250_m2_e0 | * | 66.4506 | 60.8258 | 73.2218 | 92.3535 | 1753 | 1129 | 1750 | 640 | 134 | 20.9375 | |
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | homalt | 63.5823 | 46.6086 | 100.0000 | 92.3540 | 749 | 858 | 749 | 0 | 0 | ||
| qzeng-custom | INDEL | * | segdup | homalt | 98.3551 | 99.4792 | 97.2561 | 92.3549 | 955 | 5 | 957 | 27 | 15 | 55.5556 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 37.0130 | 23.1707 | 91.9355 | 92.3551 | 57 | 189 | 57 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3567 | 12 | 0 | 12 | 0 | 0 | ||