PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60151-60200 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.7742 | 95.2381 | 98.3607 | 91.6496 | 120 | 6 | 120 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e0 | * | 95.0584 | 94.9017 | 95.2157 | 91.6500 | 7483 | 402 | 7483 | 376 | 93 | 24.7340 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m0_e0 | * | 73.5260 | 73.7864 | 73.2673 | 91.6529 | 76 | 27 | 74 | 27 | 20 | 74.0741 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 95.8628 | 97.4359 | 94.3396 | 91.6535 | 38 | 1 | 50 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | * | 96.9359 | 94.0541 | 100.0000 | 91.6547 | 174 | 11 | 175 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | homalt | 83.1300 | 71.9298 | 98.4615 | 91.6560 | 164 | 64 | 192 | 3 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.6901 | 79.4521 | 84.0580 | 91.6566 | 58 | 15 | 58 | 11 | 11 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 89.6797 | 96.1832 | 84.0000 | 91.6574 | 126 | 5 | 126 | 24 | 3 | 12.5000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 91.6584 | 167 | 9 | 166 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 95.9708 | 98.1595 | 93.8776 | 91.6586 | 320 | 6 | 322 | 21 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | * | 96.0323 | 97.6744 | 94.4444 | 91.6589 | 84 | 2 | 85 | 5 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.7796 | 85.3147 | 96.9925 | 91.6614 | 122 | 21 | 129 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e0 | * | 86.8868 | 95.2476 | 79.8754 | 91.6627 | 4770 | 238 | 4743 | 1195 | 72 | 6.0251 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | homalt | 98.9583 | 98.4456 | 99.4764 | 91.6630 | 190 | 3 | 190 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m0_e0 | het | 49.6427 | 33.0401 | 99.7840 | 91.6649 | 4620 | 9363 | 4620 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e1 | * | 94.5092 | 97.3937 | 91.7906 | 91.6664 | 2840 | 76 | 2840 | 254 | 35 | 13.7795 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.4123 | 88.8889 | 78.5714 | 91.6667 | 32 | 4 | 33 | 9 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 24 | 0 | 24 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 3.9487 | 2.0305 | 71.4286 | 91.6667 | 4 | 193 | 5 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.6667 | 3 | 1 | 3 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.6667 | 40 | 1 | 40 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | homalt | 73.8462 | 75.0000 | 72.7273 | 91.6667 | 6 | 2 | 8 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.6667 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 91.6667 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.6667 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 7.6190 | 4.5977 | 22.2222 | 91.6667 | 4 | 83 | 4 | 14 | 11 | 78.5714 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 3 | 0 | 3 | 0 | 0 | ||
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-dragen | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||