PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60101-60150 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 94.8739 | 99.0838 | 91.0072 | 91.6037 | 757 | 7 | 759 | 75 | 4 | 5.3333 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 80.0548 | 89.0909 | 72.6829 | 91.6052 | 147 | 18 | 149 | 56 | 9 | 16.0714 | |
| jli-custom | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 91.6058 | 46 | 1 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6084 | 12 | 0 | 12 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m2_e1 | * | 75.8245 | 82.3089 | 70.2872 | 91.6096 | 4178 | 898 | 4161 | 1759 | 398 | 22.6265 | |
| anovak-vg | INDEL | * | map_l150_m2_e0 | het | 71.4142 | 70.7506 | 72.0905 | 91.6109 | 641 | 265 | 669 | 259 | 74 | 28.5714 | |
| ciseli-custom | SNP | ti | segdup | het | 96.4948 | 98.3957 | 94.6659 | 91.6122 | 11837 | 193 | 11802 | 665 | 19 | 2.8571 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 55.6515 | 48.6166 | 65.0667 | 91.6126 | 246 | 260 | 244 | 131 | 111 | 84.7328 | |
| hfeng-pmm1 | INDEL | D6_15 | segdup | homalt | 98.0392 | 100.0000 | 96.1538 | 91.6129 | 50 | 0 | 50 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | * | * | 51.8752 | 80.0000 | 38.3817 | 91.6130 | 8 | 2 | 185 | 297 | 25 | 8.4175 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m1_e0 | * | 95.4128 | 91.2281 | 100.0000 | 91.6132 | 156 | 15 | 157 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | segdup | * | 68.0208 | 61.1429 | 76.6423 | 91.6157 | 107 | 68 | 105 | 32 | 32 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | het | 95.2059 | 95.7451 | 94.6728 | 91.6166 | 4973 | 221 | 4976 | 280 | 64 | 22.8571 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 91.6168 | 14 | 1 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | het | 96.5517 | 94.9153 | 98.2456 | 91.6176 | 56 | 3 | 56 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e0 | het | 98.3591 | 98.5556 | 98.1635 | 91.6192 | 3207 | 47 | 3207 | 60 | 16 | 26.6667 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | homalt | 33.4015 | 20.0491 | 100.0000 | 91.6220 | 1469 | 5858 | 1469 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l150_m2_e1 | het | 71.2728 | 70.4545 | 72.1103 | 91.6230 | 651 | 273 | 680 | 263 | 75 | 28.5171 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 12.5000 | 91.6230 | 0 | 0 | 2 | 14 | 9 | 64.2857 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | homalt | 96.1581 | 94.8052 | 97.5501 | 91.6231 | 438 | 24 | 438 | 11 | 8 | 72.7273 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | het | 89.0608 | 98.7552 | 81.0997 | 91.6235 | 476 | 6 | 472 | 110 | 12 | 10.9091 | |
| eyeh-varpipe | INDEL | C1_5 | * | het | 91.5057 | 88.8889 | 94.2813 | 91.6246 | 8 | 1 | 1220 | 74 | 16 | 21.6216 | |
| anovak-vg | SNP | tv | map_l250_m1_e0 | het | 70.5665 | 85.7303 | 59.9607 | 91.6253 | 1532 | 255 | 1526 | 1019 | 231 | 22.6693 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | het | 82.1183 | 96.2573 | 71.6010 | 91.6254 | 823 | 32 | 1127 | 447 | 132 | 29.5302 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 65.8825 | 97.2660 | 49.8107 | 91.6259 | 925 | 26 | 921 | 928 | 61 | 6.5733 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | * | 93.9848 | 95.5684 | 92.4528 | 91.6272 | 496 | 23 | 490 | 40 | 14 | 35.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m1_e0 | het | 94.2599 | 90.5263 | 98.3146 | 91.6275 | 172 | 18 | 175 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | het | 86.4020 | 89.1892 | 83.7838 | 91.6290 | 33 | 4 | 31 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 76.5432 | 72.9412 | 80.5195 | 91.6304 | 62 | 23 | 62 | 15 | 11 | 73.3333 | |
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | homalt | 97.5610 | 97.5610 | 97.5610 | 91.6327 | 160 | 4 | 160 | 4 | 3 | 75.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 61.5814 | 69.3069 | 55.4054 | 91.6337 | 70 | 31 | 82 | 66 | 26 | 39.3939 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | hetalt | 91.3793 | 84.8000 | 99.0654 | 91.6341 | 106 | 19 | 106 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | tv | segdup | * | 99.6606 | 99.8359 | 99.4859 | 91.6354 | 8518 | 14 | 8514 | 44 | 6 | 13.6364 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | het | 69.1293 | 65.6960 | 72.9412 | 91.6361 | 925 | 483 | 930 | 345 | 205 | 59.4203 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | homalt | 71.3322 | 55.4391 | 100.0000 | 91.6370 | 423 | 340 | 423 | 0 | 0 | ||
| ckim-dragen | SNP | ti | segdup | * | 98.5623 | 99.8106 | 97.3449 | 91.6401 | 19500 | 37 | 19505 | 532 | 9 | 1.6917 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 92.9788 | 98.6894 | 87.8929 | 91.6415 | 753 | 10 | 755 | 104 | 4 | 3.8462 | |
| jpowers-varprowl | INDEL | * | segdup | homalt | 93.9252 | 90.2083 | 97.9615 | 91.6422 | 866 | 94 | 865 | 18 | 17 | 94.4444 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.6427 | 28 | 5 | 29 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 91.6435 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 96.4570 | 97.8723 | 95.0820 | 91.6438 | 46 | 1 | 58 | 3 | 1 | 33.3333 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | het | 94.5928 | 95.6743 | 93.5356 | 91.6445 | 1880 | 85 | 1881 | 130 | 24 | 18.4615 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m0_e0 | * | 95.3846 | 93.9394 | 96.8750 | 91.6449 | 31 | 2 | 31 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | het | 95.5856 | 95.7898 | 95.3823 | 91.6456 | 3117 | 137 | 3119 | 151 | 40 | 26.4901 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.7165 | 97.1074 | 98.3333 | 91.6464 | 235 | 7 | 236 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | SNP | * | map_l250_m1_e0 | * | 90.1392 | 97.5353 | 83.7857 | 91.6472 | 7044 | 178 | 6976 | 1350 | 42 | 3.1111 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.6473 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 89.5833 | 95.5556 | 84.3137 | 91.6485 | 129 | 6 | 129 | 24 | 3 | 12.5000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.5000 | 95.1220 | 100.0000 | 91.6488 | 39 | 2 | 39 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 92.9289 | 98.5861 | 87.8857 | 91.6492 | 767 | 11 | 769 | 106 | 5 | 4.7170 | |