PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59201-59250 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | homalt | 39.0244 | 24.2424 | 100.0000 | 90.9091 | 8 | 25 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 46.6667 | 58.3333 | 90.9091 | 7 | 8 | 7 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 2 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 90.9091 | 22 | 4 | 22 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 90.9091 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.9091 | 7 | 1 | 7 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 90.9091 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 64.2857 | 47.3684 | 100.0000 | 90.9091 | 9 | 10 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 90.9091 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 64.6777 | 48.7562 | 96.0396 | 90.9091 | 98 | 103 | 97 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 5.6818 | 2.9412 | 83.3333 | 90.9091 | 2 | 66 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 90.9091 | 0 | 3 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e1 | het | 98.9247 | 97.8723 | 100.0000 | 90.9091 | 46 | 1 | 46 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | * | 77.2727 | 68.0000 | 89.4737 | 90.9091 | 17 | 8 | 17 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.1992 | 95.0777 | 97.3475 | 90.9113 | 367 | 19 | 367 | 10 | 7 | 70.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 49.3757 | 100.0000 | 32.7807 | 90.9114 | 3 | 0 | 692 | 1419 | 174 | 12.2622 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.1888 | 97.5806 | 96.8000 | 90.9157 | 121 | 3 | 121 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e1 | * | 59.4595 | 42.9688 | 96.4912 | 90.9236 | 55 | 73 | 55 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 90.9247 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 98.4582 | 98.2659 | 98.6513 | 90.9250 | 510 | 9 | 512 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 96.9697 | 94.1176 | 100.0000 | 90.9259 | 48 | 3 | 49 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e0 | het | 98.9011 | 97.8261 | 100.0000 | 90.9274 | 45 | 1 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | homalt | 67.5325 | 51.0806 | 99.6169 | 90.9281 | 260 | 249 | 260 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | segdup | * | 98.8439 | 97.7143 | 100.0000 | 90.9284 | 171 | 4 | 171 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | * | 85.0852 | 92.2863 | 78.9265 | 90.9345 | 1328 | 111 | 1794 | 479 | 153 | 31.9415 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 76.9744 | 72.4287 | 82.1289 | 90.9356 | 838 | 319 | 841 | 183 | 83 | 45.3552 | |