PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1154 1155 1156 1157 1158 1159 1160 1161 1162 ... 1720 1721 » 57851-57900 / 86044 show all
ndellapenna-hhga	INDEL	I16_PLUS	map_l125_m1_e0	*	78.5714	73.3333	84.6154	89.9225	11	4	11	2	1	50.0000
dgrover-gatk	SNP	ti	segdup	*	99.6780	99.8413	99.5153	89.9275	19506	31	19504	95	6	6.3158
ndellapenna-hhga	SNP	ti	map_l250_m0_e0	homalt	98.9619	98.3945	99.5360	89.9276	429	7	429	2	2	100.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	96.9979	94.5701	99.5536	89.9281	209	12	223	1	1	100.0000
dgrover-gatk	INDEL	I1_5	map_l150_m1_e0	*	98.4186	98.2213	98.6166	89.9303	497	9	499	7	2	28.5714
ckim-isaac	INDEL	*	map_l125_m2_e1	het	80.8213	68.5369	98.4709	89.9312	965	443	966	15	5	33.3333
gduggal-snapfb	INDEL	*	map_l150_m2_e0	*	93.6073	92.4716	94.7712	89.9313	1302	106	1305	72	21	29.1667
gduggal-bwaplat	INDEL	I6_15	map_l100_m2_e0	hetalt	81.0811	68.1818	100.0000	89.9329	15	7	15	0	0
ckim-vqsr	INDEL	*	map_l150_m2_e0	homalt	98.9583	98.7526	99.1649	89.9349	475	6	475	4	2	50.0000
gduggal-bwaplat	INDEL	I1_5	map_siren	het	88.1317	79.2980	99.1803	89.9363	1333	348	1331	11	5	45.4545
gduggal-bwafb	SNP	*	map_l250_m2_e1	*	97.8266	97.4959	98.1596	89.9363	7787	200	7787	146	39	26.7123
bgallagher-sentieon	INDEL	I6_15	map_l100_m2_e0	homalt	98.4615	96.9697	100.0000	89.9371	32	1	32	0	0
rpoplin-dv42	SNP	*	segdup	*	99.7488	99.7506	99.7470	89.9398	27997	70	27991	71	31	43.6620
jlack-gatk	INDEL	D1_5	map_l125_m2_e1	*	94.2377	98.7900	90.0865	89.9406	1143	14	1145	126	6	4.7619
gduggal-snapvard	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	0.0000	0.0000	48.1481	89.9415	0	0	91	98	29	29.5918
dgrover-gatk	SNP	ti	map_l250_m1_e0	*	98.5022	98.3839	98.6208	89.9439	4505	74	4505	63	18	28.5714
hfeng-pmm2	SNP	ti	map_l250_m2_e0	*	98.8259	99.1613	98.4927	89.9448	4966	42	4966	76	9	11.8421
gduggal-bwaplat	SNP	ti	map_l150_m1_e0	*	68.9590	52.8054	99.3512	89.9469	10409	9303	10413	68	24	35.2941
hfeng-pmm3	INDEL	D1_5	map_siren	hetalt	95.6522	91.6667	100.0000	89.9478	77	7	77	0	0
ghariani-varprowl	INDEL	*	map_l100_m2_e0	het	90.5891	98.0928	84.1518	89.9495	2263	44	2262	426	198	46.4789
bgallagher-sentieon	INDEL	D1_5	map_l150_m2_e1	het	97.8305	99.0421	96.6480	89.9495	517	5	519	18	3	16.6667
qzeng-custom	INDEL	I16_PLUS	map_l125_m1_e0	het	84.2105	88.8889	80.0000	89.9497	8	1	16	4	0	0.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	95.2381	95.2381	95.2381	89.9522	40	2	40	2	0	0.0000
gduggal-bwaplat	INDEL	D6_15	map_l125_m1_e0	homalt	78.5714	64.7059	100.0000	89.9543	22	12	22	0	0
egarrison-hhga	INDEL	D16_PLUS	map_l125_m1_e0	het	95.2381	100.0000	90.9091	89.9543	20	0	20	2	1	50.0000
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	82.0910	79.0543	85.3704	89.9548	11519	3052	11560	1981	144	7.2691
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	82.0910	79.0543	85.3704	89.9548	11519	3052	11560	1981	144	7.2691
gduggal-snapfb	SNP	*	map_l250_m2_e1	*	94.6649	94.5286	94.8016	89.9551	7550	437	7550	414	185	44.6860
raldana-dualsentieon	INDEL	I6_15	map_l125_m2_e1	*	88.8889	83.0189	95.6522	89.9563	44	9	44	2	0	0.0000
gduggal-snapvard	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	38.3328	100.0000	23.7109	89.9572	1	0	584	1879	136	7.2379
gduggal-snapvard	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	38.3328	100.0000	23.7109	89.9572	1	0	584	1879	136	7.2379
hfeng-pmm3	INDEL	I6_15	map_l125_m1_e0	*	92.0000	86.7925	97.8723	89.9573	46	7	46	1	1	100.0000
anovak-vg	INDEL	*	map_l150_m1_e0	*	72.5622	74.5142	70.7099	89.9578	997	341	1026	425	224	52.7059
qzeng-custom	INDEL	D1_5	map_l100_m2_e0	het	89.9373	83.9968	96.7820	89.9588	1055	201	1203	40	27	67.5000
eyeh-varpipe	INDEL	D6_15	map_l150_m2_e1	*	88.0187	87.0588	89.0000	89.9598	74	11	89	11	11	100.0000
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	11.3208	6.7669	34.6154	89.9614	9	124	9	17	13	76.4706
jmaeng-gatk	SNP	*	map_l150_m1_e0	het	84.2606	74.8343	96.4038	89.9614	14455	4861	14449	539	39	7.2356
jpowers-varprowl	INDEL	*	map_l125_m2_e1	het	92.8294	93.3239	92.3401	89.9662	1314	94	1314	109	76	69.7248
asubramanian-gatk	INDEL	D6_15	map_l125_m1_e0	homalt	95.3846	91.1765	100.0000	89.9676	31	3	31	0	0
ghariani-varprowl	INDEL	I1_5	map_l125_m2_e0	*	94.2808	95.2159	93.3638	89.9679	816	41	816	58	21	36.2069
eyeh-varpipe	INDEL	D1_5	map_l150_m2_e0	homalt	97.8628	97.9339	97.7918	89.9684	237	5	310	7	7	100.0000
dgrover-gatk	INDEL	I6_15	map_l100_m2_e0	homalt	98.4615	96.9697	100.0000	89.9687	32	1	32	0	0
astatham-gatk	INDEL	I6_15	map_l100_m2_e1	homalt	98.4615	96.9697	100.0000	89.9687	32	1	32	0	0
asubramanian-gatk	INDEL	I1_5	map_l150_m0_e0	homalt	98.4848	97.0149	100.0000	89.9691	65	2	65	0	0
astatham-gatk	INDEL	*	map_l125_m2_e1	het	94.9130	92.6847	97.2511	89.9694	1305	103	1309	37	5	13.5135
jpowers-varprowl	SNP	*	segdup	homalt	99.4812	99.9441	99.0225	89.9716	10737	6	10738	106	65	61.3208
gduggal-bwafb	SNP	tv	map_l250_m2_e0	het	96.7209	96.5464	96.8960	89.9730	1873	67	1873	60	11	18.3333
rpoplin-dv42	INDEL	I1_5	map_l150_m2_e1	*	98.2012	97.5518	98.8593	89.9733	518	13	520	6	2	33.3333
hfeng-pmm3	INDEL	D1_5	map_l100_m1_e0	hetalt	94.3820	89.3617	100.0000	89.9761	42	5	42	0	0
astatham-gatk	INDEL	D6_15	map_l100_m1_e0	het	95.3488	97.6190	93.1818	89.9772	123	3	123	9	2	22.2222

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge