PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57751-57800 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 39.4270 | 89.8476 | 0 | 0 | 289 | 444 | 84 | 18.9189 | |
| dgrover-gatk | INDEL | * | map_l125_m2_e1 | het | 98.0504 | 98.0824 | 98.0184 | 89.8484 | 1381 | 27 | 1385 | 28 | 4 | 14.2857 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.9091 | 97.5610 | 85.1064 | 89.8488 | 40 | 1 | 40 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | map_l150_m2_e0 | homalt | 81.0641 | 69.8545 | 96.5591 | 89.8494 | 336 | 145 | 449 | 16 | 9 | 56.2500 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | het | 95.6438 | 95.0000 | 96.2963 | 89.8496 | 19 | 1 | 26 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 89.8496 | 27 | 1 | 27 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l250_m2_e1 | * | 97.2818 | 97.6712 | 96.8956 | 89.8498 | 7801 | 186 | 7803 | 250 | 32 | 12.8000 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | * | 94.8003 | 95.0510 | 94.5509 | 89.8505 | 2516 | 131 | 2516 | 145 | 53 | 36.5517 | |
| ciseli-custom | INDEL | I6_15 | segdup | het | 58.0153 | 45.7831 | 79.1667 | 89.8520 | 38 | 45 | 38 | 10 | 9 | 90.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | het | 60.8031 | 45.0382 | 93.5484 | 89.8527 | 59 | 72 | 58 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | SNP | * | segdup | het | 99.5790 | 99.7344 | 99.4241 | 89.8527 | 17271 | 46 | 17265 | 100 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | het | 93.7377 | 98.1647 | 89.6927 | 89.8540 | 2300 | 43 | 2306 | 265 | 22 | 8.3019 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 79.5047 | 74.8408 | 84.7885 | 89.8548 | 940 | 316 | 942 | 169 | 39 | 23.0769 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.8551 | 7 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.8551 | 7 | 1 | 7 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | het | 62.5000 | 55.5556 | 71.4286 | 89.8551 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | * | 97.8174 | 97.4762 | 98.1609 | 89.8565 | 7686 | 199 | 7686 | 144 | 38 | 26.3889 | |
| ckim-dragen | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 89.8570 | 78 | 6 | 78 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | * | 95.7635 | 96.0227 | 95.5056 | 89.8575 | 169 | 7 | 170 | 8 | 1 | 12.5000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 98.1921 | 98.3264 | 98.0583 | 89.8594 | 705 | 12 | 707 | 14 | 3 | 21.4286 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | * | 98.6338 | 98.8840 | 98.3849 | 89.8595 | 7797 | 88 | 7797 | 128 | 16 | 12.5000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 80.0000 | 88.8889 | 72.7273 | 89.8618 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | segdup | homalt | 85.0575 | 74.0000 | 100.0000 | 89.8630 | 37 | 13 | 37 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m0_e0 | het | 97.4026 | 97.3958 | 97.4093 | 89.8634 | 187 | 5 | 188 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.5246 | 98.1818 | 80.5970 | 89.8638 | 108 | 2 | 108 | 26 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 89.8649 | 45 | 2 | 45 | 0 | 0 | ||
| jli-custom | SNP | * | segdup | het | 99.4076 | 99.8037 | 99.0146 | 89.8653 | 17283 | 34 | 17283 | 172 | 2 | 1.1628 | |
| ckim-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.7805 | 98.7805 | 98.7805 | 89.8661 | 486 | 6 | 486 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 93.0501 | 95.7746 | 90.4762 | 89.8673 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 93.6255 | 92.5197 | 94.7581 | 89.8693 | 470 | 38 | 470 | 26 | 18 | 69.2308 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1366 | 96.3415 | 100.0000 | 89.8718 | 79 | 3 | 79 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | het | 97.6501 | 97.3958 | 97.9058 | 89.8727 | 187 | 5 | 187 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 89.8734 | 24 | 12 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.8734 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 97.7337 | 98.5542 | 96.9267 | 89.8768 | 818 | 12 | 820 | 26 | 3 | 11.5385 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | homalt | 99.3243 | 99.3243 | 99.3243 | 89.8769 | 147 | 1 | 147 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | het | 78.1031 | 64.4085 | 99.1939 | 89.8771 | 6522 | 3604 | 6522 | 53 | 13 | 24.5283 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 65.3465 | 48.5294 | 100.0000 | 89.8773 | 33 | 35 | 33 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 87.2727 | 80.0000 | 96.0000 | 89.8785 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 95.5224 | 89.8792 | 0 | 0 | 64 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2442 | 88.7931 | 98.1651 | 89.8793 | 103 | 13 | 107 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | * | 89.2193 | 83.9161 | 95.2381 | 89.8795 | 120 | 23 | 120 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.3268 | 85.0000 | 94.1176 | 89.8810 | 17 | 3 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | het | 89.2857 | 83.3333 | 96.1538 | 89.8833 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | het | 94.9267 | 92.7390 | 97.2201 | 89.8845 | 1290 | 101 | 1294 | 37 | 5 | 13.5135 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e1 | homalt | 98.8810 | 98.7805 | 98.9817 | 89.8846 | 486 | 6 | 486 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | INDEL | * | func_cds | * | 99.5516 | 99.7753 | 99.3289 | 89.8846 | 444 | 1 | 444 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||