PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56901-56950 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | * | map_l125_m1_e0 | het | 95.1476 | 93.1835 | 97.1963 | 89.1710 | 1244 | 91 | 1248 | 36 | 5 | 13.8889 | |
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | * | 97.3075 | 96.9399 | 97.6780 | 89.1719 | 2566 | 81 | 2566 | 61 | 14 | 22.9508 | |
| jpowers-varprowl | SNP | ti | segdup | homalt | 99.6282 | 99.9600 | 99.2985 | 89.1736 | 7502 | 3 | 7502 | 53 | 36 | 67.9245 | |
| egarrison-hhga | INDEL | * | map_l150_m1_e0 | het | 97.3128 | 97.1930 | 97.4329 | 89.1766 | 831 | 24 | 835 | 22 | 6 | 27.2727 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 73.1615 | 86.6667 | 63.2979 | 89.1767 | 143 | 22 | 119 | 69 | 11 | 15.9420 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 84.0000 | 89.1775 | 0 | 0 | 21 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.8330 | 91.6667 | 92.0000 | 89.1775 | 22 | 2 | 23 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | homalt | 95.3524 | 92.6958 | 98.1659 | 89.1785 | 1231 | 97 | 1231 | 23 | 5 | 21.7391 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8261 | 95.7447 | 100.0000 | 89.1827 | 45 | 2 | 45 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | hetalt | 92.8870 | 88.8000 | 97.3684 | 89.1841 | 111 | 14 | 111 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 88.3710 | 98.3627 | 80.2220 | 89.1848 | 781 | 13 | 795 | 196 | 29 | 14.7959 | |
| astatham-gatk | INDEL | * | map_l125_m2_e1 | * | 96.4891 | 95.0562 | 97.9658 | 89.1866 | 2115 | 110 | 2119 | 44 | 9 | 20.4545 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | * | 68.8299 | 66.6667 | 71.1382 | 89.1868 | 176 | 88 | 175 | 71 | 65 | 91.5493 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | * | 54.5455 | 42.8571 | 75.0000 | 89.1892 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 43.6441 | 89.1892 | 0 | 0 | 103 | 133 | 36 | 27.0677 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | * | 75.4516 | 68.9320 | 83.3333 | 89.1892 | 71 | 32 | 70 | 14 | 12 | 85.7143 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 89.1892 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.1892 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 89.1892 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 89.1892 | 0 | 0 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 67.1449 | 70.2703 | 64.2857 | 89.1892 | 26 | 11 | 18 | 10 | 2 | 20.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 89.1892 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | homalt | 59.2593 | 53.3333 | 66.6667 | 89.1892 | 8 | 7 | 8 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9223 | 96.9697 | 96.8750 | 89.1892 | 64 | 2 | 62 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.1892 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.6170 | 95.6522 | 91.6667 | 89.1892 | 22 | 1 | 22 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 89.1892 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 78.8161 | 88.4841 | 71.0526 | 89.1898 | 753 | 98 | 729 | 297 | 73 | 24.5791 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.7368 | 90.7258 | 99.1189 | 89.1905 | 225 | 23 | 225 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9059 | 99.0142 | 98.7978 | 89.1921 | 904 | 9 | 904 | 11 | 6 | 54.5455 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 36.0728 | 82.2222 | 23.1047 | 89.1924 | 74 | 16 | 64 | 213 | 1 | 0.4695 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | * | 96.9371 | 97.9962 | 95.9006 | 89.1934 | 3619 | 74 | 3626 | 155 | 21 | 13.5484 | |
| rpoplin-dv42 | SNP | * | segdup | homalt | 99.8140 | 99.8883 | 99.7398 | 89.1939 | 10731 | 12 | 10731 | 28 | 28 | 100.0000 | |
| anovak-vg | SNP | tv | map_l250_m2_e0 | homalt | 81.7550 | 69.5838 | 99.0868 | 89.1941 | 652 | 285 | 651 | 6 | 4 | 66.6667 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.7151 | 96.2963 | 91.2688 | 89.1952 | 1248 | 48 | 1338 | 128 | 35 | 27.3438 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | het | 97.4343 | 98.8406 | 96.0674 | 89.1958 | 341 | 4 | 342 | 14 | 1 | 7.1429 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | het | 78.9116 | 95.0820 | 67.4419 | 89.1960 | 58 | 3 | 58 | 28 | 19 | 67.8571 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8254 | 95.3125 | 98.3871 | 89.1986 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | het | 95.7563 | 93.4783 | 98.1481 | 89.2000 | 43 | 3 | 53 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3614 | 99.1701 | 95.6175 | 89.2020 | 478 | 4 | 480 | 22 | 2 | 9.0909 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | * | 97.1159 | 97.3177 | 96.9150 | 89.2026 | 2576 | 71 | 2576 | 82 | 11 | 13.4146 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.0451 | 54.2606 | 94.9038 | 89.2027 | 987 | 832 | 987 | 53 | 38 | 71.6981 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 69.0451 | 54.2606 | 94.9038 | 89.2027 | 987 | 832 | 987 | 53 | 38 | 71.6981 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 94.8682 | 95.0000 | 94.7368 | 89.2045 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | segdup | * | 98.9694 | 99.5663 | 98.3796 | 89.2053 | 8495 | 37 | 8500 | 140 | 20 | 14.2857 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | het | 98.1627 | 97.3958 | 98.9418 | 89.2062 | 187 | 5 | 187 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.5075 | 100.0000 | 97.0588 | 89.2063 | 33 | 0 | 33 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |