PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1132 1133 1134 1135 1136 1137 1138 1139 1140 ... 1720 1721 » 56751-56800 / 86044 show all
ckim-gatk	INDEL	I6_15	map_l100_m1_e0	homalt	98.4615	96.9697	100.0000	89.0411	32	1	32	0	0
cchapple-custom	INDEL	D16_PLUS	map_siren	homalt	84.8485	82.3529	87.5000	89.0411	28	6	28	4	1	25.0000
egarrison-hhga	INDEL	I6_15	map_l125_m2_e0	hetalt	100.0000	100.0000	100.0000	89.0411	8	0	8	0	0
ckim-vqsr	INDEL	I6_15	map_l100_m1_e0	homalt	98.4615	96.9697	100.0000	89.0411	32	1	32	0	0
ltrigg-rtg2	INDEL	I6_15	map_l150_m2_e1	homalt	100.0000	100.0000	100.0000	89.0411	8	0	8	0	0
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.3976	99.2333	99.5624	89.0421	906	7	910	4	4	100.0000
hfeng-pmm2	INDEL	D6_15	map_l100_m2_e0	het	96.9697	97.7099	96.2406	89.0445	128	3	128	5	1	20.0000
hfeng-pmm3	SNP	*	map_l250_m2_e0	het	98.7752	98.5945	98.9565	89.0448	5121	73	5121	54	3	5.5556
bgallagher-sentieon	SNP	ti	map_l250_m1_e0	*	98.5526	98.8862	98.2213	89.0457	4528	51	4528	82	19	23.1707
gduggal-bwafb	INDEL	D1_5	map_l150_m2_e0	*	97.3150	97.3788	97.2513	89.0482	743	20	743	21	3	14.2857
cchapple-custom	INDEL	D6_15	map_l125_m2_e0	het	94.8166	95.7746	93.8776	89.0503	68	3	92	6	2	33.3333
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	86.7925	100.0000	76.6667	89.0511	23	0	23	7	7	100.0000
gduggal-snapvard	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	0.0000	0.0000	26.8946	89.0519	0	0	291	791	71	8.9760
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	58.3357	89.3782	43.2977	89.0534	345	41	365	478	34	7.1130
hfeng-pmm3	SNP	ti	map_l250_m1_e0	het	98.8707	98.8208	98.9207	89.0542	2933	35	2933	32	3	9.3750
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	82.3910	88.2353	77.2727	89.0547	45	6	34	10	2	20.0000
ghariani-varprowl	INDEL	D6_15	map_l100_m2_e1	*	67.6145	65.4545	69.9219	89.0552	180	95	179	77	71	92.2078
gduggal-snapfb	INDEL	*	map_l125_m1_e0	homalt	96.9613	95.9016	98.0447	89.0553	702	30	702	14	9	64.2857
ckim-dragen	SNP	*	map_l250_m1_e0	*	97.2004	97.5768	96.8269	89.0554	7047	175	7049	231	29	12.5541
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	94.4444	94.4444	94.4444	89.0578	34	2	34	2	0	0.0000
jmaeng-gatk	INDEL	D1_5	map_l100_m1_e0	het	96.0274	98.7593	93.4426	89.0578	1194	15	1197	84	6	7.1429
ckim-dragen	INDEL	I6_15	map_l100_m2_e1	*	96.9697	96.5517	97.3913	89.0580	112	4	112	3	0	0.0000
ckim-isaac	INDEL	D1_5	map_l125_m2_e1	het	82.2394	70.6494	98.3784	89.0597	544	226	546	9	3	33.3333
dgrover-gatk	INDEL	I6_15	map_l125_m2_e0	hetalt	93.3333	87.5000	100.0000	89.0625	7	1	7	0	0
eyeh-varpipe	INDEL	C16_PLUS	HG002compoundhet	homalt		0.0000	0.0000	89.0625	0	0	0	7	6	85.7143
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	87.5000	77.7778	100.0000	89.0625	7	2	7	0	0
ckim-gatk	SNP	*	map_l100_m1_e0	hetalt	78.2609	65.8537	96.4286	89.0625	27	14	27	1	1	100.0000
ckim-gatk	SNP	tv	map_l100_m1_e0	hetalt	78.2609	65.8537	96.4286	89.0625	27	14	27	1	1	100.0000
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	93.9394	88.5714	100.0000	89.0625	31	4	28	0	0
ckim-gatk	INDEL	*	map_l150_m1_e0	homalt	98.8082	98.7013	98.9154	89.0629	456	6	456	5	3	60.0000
gduggal-bwaplat	INDEL	I1_5	map_siren	*	85.1433	74.4759	99.3775	89.0629	2238	767	2235	14	8	57.1429
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.6003	88.1579	93.1818	89.0638	134	18	123	9	1	11.1111
ckim-gatk	INDEL	*	map_l100_m2_e0	*	97.0660	98.4024	95.7654	89.0665	3634	59	3641	161	20	12.4224
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	64.8148	55.5556	77.7778	89.0688	20	16	21	6	0	0.0000
egarrison-hhga	INDEL	D16_PLUS	map_siren	het	86.5700	96.1538	78.7234	89.0698	75	3	74	20	14	70.0000
asubramanian-gatk	SNP	tv	map_l125_m2_e0	homalt	39.9681	24.9792	99.9335	89.0706	1503	4514	1503	1	0	0.0000
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	51.8908	43.1818	65.0000	89.0710	19	25	13	7	3	42.8571
egarrison-hhga	INDEL	D6_15	map_l125_m2_e1	*	92.4953	90.6250	94.4444	89.0720	116	12	119	7	5	71.4286
hfeng-pmm2	INDEL	D1_5	map_l150_m0_e0	homalt	99.4152	100.0000	98.8372	89.0724	85	0	85	1	1	100.0000
jmaeng-gatk	INDEL	I1_5	HG002compoundhet	homalt	73.9819	99.3921	58.9189	89.0727	327	2	327	228	227	99.5614
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	95.6522	91.6667	100.0000	89.0728	33	3	33	0	0
jpowers-varprowl	INDEL	D6_15	map_l100_m0_e0	het	79.1367	91.6667	69.6203	89.0733	55	5	55	24	21	87.5000
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	98.7179	100.0000	97.4684	89.0733	15	0	231	6	4	66.6667
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	98.7179	100.0000	97.4684	89.0733	15	0	231	6	4	66.6667
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	86.7838	93.8345	80.7186	89.0750	2222	146	2269	542	180	33.2103
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.1706	96.9697	95.3846	89.0756	64	2	62	3	0	0.0000
ciseli-custom	INDEL	D1_5	map_l150_m1_e0	homalt	78.3964	77.1930	79.6380	89.0810	176	52	176	45	36	80.0000
gduggal-snapvard	INDEL	C6_15	lowcmp_SimpleRepeat_diTR_11to50	het	0.0000	0.0000	46.0317	89.0815	0	0	87	102	40	39.2157
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.1351	95.4545	96.8254	89.0815	63	3	61	2	0	0.0000
qzeng-custom	SNP	ti	map_l250_m2_e1	homalt	74.0705	59.2551	98.7643	89.0815	1050	722	1039	13	12	92.3077

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge