PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56701-56750 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | map_siren | * | 50.9653 | 84.6154 | 36.4641 | 88.9936 | 121 | 22 | 132 | 230 | 13 | 5.6522 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 60.3108 | 43.3915 | 98.8571 | 88.9937 | 174 | 227 | 173 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | * | 94.4260 | 94.9425 | 93.9150 | 88.9970 | 826 | 44 | 818 | 53 | 23 | 43.3962 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 79.2739 | 93.8895 | 68.5957 | 88.9971 | 799 | 52 | 806 | 369 | 43 | 11.6531 | |
| gduggal-snapvard | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 93.2755 | 88.9976 | 0 | 0 | 860 | 62 | 31 | 50.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e0 | het | 98.7844 | 98.6478 | 98.9214 | 88.9993 | 3210 | 44 | 3210 | 35 | 8 | 22.8571 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | homalt | 75.0000 | 69.2308 | 81.8182 | 89.0000 | 18 | 8 | 18 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.5055 | 89.5833 | 100.0000 | 89.0000 | 43 | 5 | 44 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | * | 70.8333 | 65.3846 | 77.2727 | 89.0000 | 17 | 9 | 17 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | het | 64.5740 | 53.3333 | 81.8182 | 89.0000 | 8 | 7 | 9 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.1940 | 78.5714 | 95.4545 | 89.0000 | 22 | 6 | 21 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.1183 | 95.6522 | 98.6301 | 89.0019 | 286 | 13 | 288 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e1 | het | 96.4026 | 97.5325 | 95.2986 | 89.0022 | 751 | 19 | 750 | 37 | 3 | 8.1081 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 94.3709 | 91.9355 | 96.9388 | 89.0052 | 285 | 25 | 285 | 9 | 6 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.8077 | 94.1176 | 78.8462 | 89.0063 | 48 | 3 | 41 | 11 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | * | 95.3104 | 96.2631 | 94.3764 | 89.0069 | 1288 | 50 | 1309 | 78 | 15 | 19.2308 | |
| ciseli-custom | INDEL | * | map_l100_m2_e1 | het | 73.2415 | 70.9774 | 75.6549 | 89.0075 | 1663 | 680 | 1675 | 539 | 319 | 59.1837 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 89.0110 | 10 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 89.0141 | 39 | 0 | 39 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | homalt | 86.0150 | 75.9690 | 99.1228 | 89.0173 | 196 | 62 | 226 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | homalt | 98.7526 | 98.7526 | 98.7526 | 89.0183 | 475 | 6 | 475 | 6 | 5 | 83.3333 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9924 | 98.9924 | 98.9924 | 89.0195 | 786 | 8 | 786 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | het | 96.3650 | 95.8991 | 96.8354 | 89.0202 | 304 | 13 | 306 | 10 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l125_m0_e0 | * | 94.9271 | 95.9184 | 93.9560 | 89.0203 | 846 | 36 | 855 | 55 | 11 | 20.0000 | |
| asubramanian-gatk | SNP | tv | map_l125_m2_e1 | homalt | 40.1526 | 25.1235 | 99.9345 | 89.0207 | 1526 | 4548 | 1526 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.9597 | 93.3333 | 94.5946 | 89.0208 | 56 | 4 | 35 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.1867 | 94.5274 | 100.0000 | 89.0230 | 190 | 11 | 191 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | het | 92.4908 | 98.8170 | 86.9258 | 89.0233 | 1253 | 15 | 1230 | 185 | 49 | 26.4865 | |
| gduggal-bwavard | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 99.4465 | 89.0239 | 0 | 0 | 539 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 98.4213 | 98.0315 | 98.8142 | 89.0239 | 498 | 10 | 500 | 6 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | homalt | 78.7879 | 86.6667 | 72.2222 | 89.0244 | 13 | 2 | 13 | 5 | 4 | 80.0000 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | homalt | 98.8142 | 99.3641 | 98.2704 | 89.0250 | 625 | 4 | 625 | 11 | 8 | 72.7273 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | homalt | 98.6802 | 98.7805 | 98.5801 | 89.0274 | 486 | 6 | 486 | 7 | 6 | 85.7143 | |
| jlack-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.4772 | 98.5772 | 98.3773 | 89.0274 | 485 | 7 | 485 | 8 | 5 | 62.5000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e1 | het | 97.8929 | 97.8355 | 97.9504 | 89.0296 | 904 | 20 | 908 | 19 | 3 | 15.7895 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 93.4397 | 90.5455 | 96.5251 | 89.0301 | 249 | 26 | 250 | 9 | 3 | 33.3333 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | het | 76.0794 | 61.7119 | 99.1672 | 89.0304 | 13086 | 8119 | 13098 | 110 | 34 | 30.9091 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | * | 95.5016 | 96.0682 | 94.9416 | 89.0312 | 733 | 30 | 732 | 39 | 8 | 20.5128 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | * | 94.5107 | 95.4217 | 93.6170 | 89.0315 | 792 | 38 | 792 | 54 | 19 | 35.1852 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | * | 97.3667 | 97.4293 | 97.3042 | 89.0328 | 758 | 20 | 758 | 21 | 3 | 14.2857 | |
| hfeng-pmm1 | SNP | ti | segdup | het | 99.6179 | 99.7007 | 99.5352 | 89.0346 | 11994 | 36 | 11992 | 56 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | homalt | 99.6477 | 99.5327 | 99.7630 | 89.0347 | 852 | 4 | 842 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 64.0000 | 47.0588 | 100.0000 | 89.0351 | 24 | 27 | 25 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | het | 91.5448 | 98.9748 | 85.1525 | 89.0375 | 1255 | 13 | 1256 | 219 | 64 | 29.2237 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | het | 71.5575 | 68.7561 | 74.5968 | 89.0375 | 702 | 319 | 740 | 252 | 75 | 29.7619 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 93.1123 | 88.5965 | 98.1132 | 89.0383 | 101 | 13 | 104 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | homalt | 98.9985 | 98.1972 | 99.8130 | 89.0383 | 2669 | 49 | 2669 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 91.7468 | 88.1250 | 95.6790 | 89.0392 | 141 | 19 | 155 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | het | 96.3702 | 94.8718 | 97.9167 | 89.0411 | 37 | 2 | 47 | 1 | 0 | 0.0000 | |