PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55851-55900 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | het | 98.2088 | 97.6590 | 98.7648 | 88.3806 | 1919 | 46 | 1919 | 24 | 3 | 12.5000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | het | 92.3518 | 98.9247 | 86.5979 | 88.3812 | 1196 | 13 | 1176 | 182 | 48 | 26.3736 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e0 | * | 96.4912 | 94.8276 | 98.2143 | 88.3817 | 110 | 6 | 110 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.8025 | 94.1748 | 97.4874 | 88.3830 | 194 | 12 | 194 | 5 | 2 | 40.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 14.2012 | 12.0000 | 17.3913 | 88.3838 | 3 | 22 | 4 | 19 | 3 | 15.7895 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 88.8889 | 83.0189 | 95.6522 | 88.3838 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.3043 | 91.3043 | 91.3043 | 88.3838 | 21 | 2 | 21 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 88.3838 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.9674 | 84.0188 | 99.1690 | 88.3848 | 715 | 136 | 716 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 88.3871 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | homalt | 97.2222 | 97.2222 | 97.2222 | 88.3871 | 35 | 1 | 35 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m2_e0 | homalt | 98.9605 | 98.9605 | 98.9605 | 88.3873 | 476 | 5 | 476 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.1337 | 98.0769 | 96.2085 | 88.3875 | 204 | 4 | 203 | 8 | 3 | 37.5000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | * | 95.2145 | 95.8159 | 94.6207 | 88.3889 | 687 | 30 | 686 | 39 | 8 | 20.5128 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | het | 93.6777 | 93.9799 | 93.3775 | 88.3891 | 281 | 18 | 282 | 20 | 3 | 15.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | * | 98.7483 | 98.5427 | 98.9547 | 88.3900 | 2840 | 42 | 2840 | 30 | 4 | 13.3333 | |
| jlack-gatk | SNP | * | segdup | homalt | 99.8743 | 99.8418 | 99.9069 | 88.3916 | 10726 | 17 | 10726 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | homalt | 99.7542 | 99.6752 | 99.8333 | 88.3918 | 2455 | 8 | 2396 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9648 | 89.8058 | 96.3542 | 88.3918 | 185 | 21 | 185 | 7 | 3 | 42.8571 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 50.9091 | 51.8519 | 50.0000 | 88.3929 | 14 | 13 | 13 | 13 | 13 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | het | 78.5714 | 64.7059 | 100.0000 | 88.3929 | 11 | 6 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 96.9664 | 98.3290 | 95.6412 | 88.3941 | 1883 | 32 | 1887 | 86 | 8 | 9.3023 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | * | 95.3427 | 97.9691 | 92.8535 | 88.3944 | 3618 | 75 | 3625 | 279 | 28 | 10.0358 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6744 | 97.2222 | 98.1308 | 88.3948 | 105 | 3 | 105 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | het | 78.3217 | 94.9153 | 66.6667 | 88.3978 | 56 | 3 | 56 | 28 | 19 | 67.8571 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.7677 | 66.6667 | 90.4762 | 88.3978 | 18 | 9 | 19 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l100_m2_e0 | hetalt | 82.3529 | 70.0000 | 100.0000 | 88.3978 | 21 | 9 | 21 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | * | 81.1449 | 69.3009 | 97.8719 | 88.3988 | 14215 | 6297 | 14211 | 309 | 34 | 11.0032 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | * | 97.7479 | 96.7105 | 98.8077 | 88.3990 | 1323 | 45 | 1326 | 16 | 4 | 25.0000 | |
| jmaeng-gatk | SNP | * | segdup | homalt | 99.4625 | 99.0412 | 99.8873 | 88.3992 | 10640 | 103 | 10640 | 12 | 12 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 32.2896 | 88.3995 | 0 | 0 | 165 | 346 | 61 | 17.6301 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 32.2896 | 88.3995 | 0 | 0 | 165 | 346 | 61 | 17.6301 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | het | 94.7170 | 96.3778 | 93.1124 | 88.4024 | 1357 | 51 | 1433 | 106 | 19 | 17.9245 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e1 | * | 98.3301 | 98.3290 | 98.3312 | 88.4043 | 765 | 13 | 766 | 13 | 5 | 38.4615 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9733 | 99.5868 | 98.3673 | 88.4051 | 241 | 1 | 241 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e0 | * | 83.8710 | 73.5849 | 97.5000 | 88.4058 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.4058 | 16 | 8 | 16 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.3022 | 68.5714 | 96.8750 | 88.4058 | 24 | 11 | 31 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | * | 30.1075 | 18.1818 | 87.5000 | 88.4058 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | het | 48.2759 | 33.3333 | 87.5000 | 88.4058 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | homalt | 94.2675 | 90.2439 | 98.6667 | 88.4080 | 148 | 16 | 148 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 98.4283 | 98.4273 | 98.4293 | 88.4102 | 751 | 12 | 752 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 88.4120 | 27 | 1 | 27 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 88.4120 | 26 | 7 | 26 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.3928 | 87.7828 | 95.3125 | 88.4128 | 194 | 27 | 183 | 9 | 1 | 11.1111 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e1 | het | 94.9153 | 91.8033 | 98.2456 | 88.4146 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | * | 88.0989 | 95.5920 | 81.6951 | 88.4146 | 1106 | 51 | 1388 | 311 | 102 | 32.7974 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.1597 | 98.3333 | 100.0000 | 88.4157 | 59 | 1 | 68 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e1 | * | 97.0711 | 97.4935 | 96.6524 | 88.4160 | 1128 | 29 | 1126 | 39 | 5 | 12.8205 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 95.7656 | 94.6335 | 96.9251 | 88.4193 | 723 | 41 | 725 | 23 | 3 | 13.0435 | |