PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55751-55800 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | het | 94.6154 | 97.6190 | 91.7910 | 88.3173 | 123 | 3 | 123 | 11 | 6 | 54.5455 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 37.5940 | 23.1481 | 100.0000 | 88.3178 | 25 | 83 | 25 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 88.3178 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | * | 98.6071 | 98.3196 | 98.8962 | 88.3190 | 2867 | 49 | 2867 | 32 | 7 | 21.8750 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.3212 | 32 | 1 | 32 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 88.3212 | 0 | 0 | 0 | 16 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | homalt | 87.5010 | 81.5443 | 94.3966 | 88.3212 | 433 | 98 | 438 | 26 | 1 | 3.8462 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 54.9020 | 40.0000 | 87.5000 | 88.3212 | 14 | 21 | 14 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 63.1579 | 54.5455 | 75.0000 | 88.3212 | 12 | 10 | 12 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m2_e1 | * | 98.7184 | 97.8841 | 99.5670 | 88.3214 | 7818 | 169 | 7818 | 34 | 16 | 47.0588 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3723 | 99.3395 | 99.4052 | 88.3238 | 1504 | 10 | 1504 | 9 | 9 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4013 | 96.9970 | 97.8091 | 88.3245 | 646 | 20 | 625 | 14 | 5 | 35.7143 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4013 | 96.9970 | 97.8091 | 88.3245 | 646 | 20 | 625 | 14 | 5 | 35.7143 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.3249 | 23 | 1 | 23 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 93.4498 | 98.2619 | 89.0871 | 88.3254 | 848 | 15 | 849 | 104 | 6 | 5.7692 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | * | 97.5855 | 97.7823 | 97.3896 | 88.3263 | 485 | 11 | 485 | 13 | 1 | 7.6923 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | homalt | 97.2973 | 97.2973 | 97.2973 | 88.3281 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.9763 | 97.9079 | 98.0447 | 88.3293 | 702 | 15 | 702 | 14 | 4 | 28.5714 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | * | 63.3663 | 60.3774 | 66.6667 | 88.3295 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | * | 94.7920 | 92.3077 | 97.4138 | 88.3300 | 108 | 9 | 113 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.5063 | 86.6667 | 94.7020 | 88.3308 | 143 | 22 | 143 | 8 | 6 | 75.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 93.9683 | 89.7119 | 98.6486 | 88.3311 | 436 | 50 | 438 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 88.3333 | 42 | 2 | 42 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.3333 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 88.3333 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 88.3333 | 0 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.3333 | 7 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 88.3333 | 0 | 0 | 7 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 88.3333 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9578 | 85.8844 | 98.9556 | 88.3338 | 1515 | 249 | 1516 | 16 | 4 | 25.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8706 | 96.2846 | 99.5098 | 88.3340 | 1218 | 47 | 1218 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l125_m1_e0 | * | 96.6598 | 95.3963 | 97.9572 | 88.3361 | 2010 | 97 | 2014 | 42 | 9 | 21.4286 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e0 | * | 93.0771 | 91.5301 | 94.6773 | 88.3364 | 2010 | 186 | 2010 | 113 | 79 | 69.9115 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 72.0128 | 70.5263 | 73.5632 | 88.3378 | 67 | 28 | 64 | 23 | 19 | 82.6087 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | * | 85.8371 | 91.9791 | 80.4640 | 88.3383 | 1938 | 169 | 2636 | 640 | 251 | 39.2188 | |
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | het | 97.9024 | 98.0117 | 97.7933 | 88.3397 | 838 | 17 | 842 | 19 | 3 | 15.7895 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 88.3408 | 0 | 0 | 0 | 26 | 0 | 0.0000 | ||
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | homalt | 98.3169 | 96.8553 | 99.8232 | 88.3416 | 1694 | 55 | 1694 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | homalt | 98.9201 | 99.1342 | 98.7069 | 88.3417 | 458 | 4 | 458 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 8.2305 | 5.2083 | 19.6078 | 88.3429 | 20 | 364 | 20 | 82 | 46 | 56.0976 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e0 | het | 91.9870 | 91.5747 | 92.4029 | 88.3430 | 6641 | 611 | 6641 | 546 | 288 | 52.7473 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | het | 81.3293 | 81.0811 | 81.5789 | 88.3436 | 30 | 7 | 31 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e1 | * | 98.5375 | 98.2270 | 98.8501 | 88.3448 | 4986 | 90 | 4986 | 58 | 38 | 65.5172 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | * | 96.3932 | 96.8966 | 95.8951 | 88.3455 | 843 | 27 | 841 | 36 | 7 | 19.4444 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3262 | 99.0514 | 99.6025 | 88.3465 | 1253 | 12 | 1253 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e1 | homalt | 87.7237 | 81.8519 | 94.5032 | 88.3469 | 442 | 98 | 447 | 26 | 1 | 3.8462 | |
| egarrison-hhga | INDEL | * | map_siren | hetalt | 84.9102 | 75.3036 | 97.3262 | 88.3489 | 186 | 61 | 182 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | het | 97.9174 | 98.4270 | 97.4132 | 88.3493 | 1314 | 21 | 1318 | 35 | 5 | 14.2857 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 84.6154 | 78.5714 | 91.6667 | 88.3495 | 11 | 3 | 11 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2222 | 97.2222 | 97.2222 | 88.3495 | 35 | 1 | 35 | 1 | 0 | 0.0000 | |