PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55601-55650 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.6904 | 70.9091 | 61.1872 | 88.2131 | 117 | 48 | 134 | 85 | 29 | 34.1176 | |
| ckim-vqsr | SNP | ti | map_l125_m2_e1 | * | 71.0090 | 55.3306 | 99.0860 | 88.2132 | 16914 | 13655 | 16912 | 156 | 5 | 3.2051 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.3783 | 86.4597 | 99.1667 | 88.2132 | 1309 | 205 | 1309 | 11 | 8 | 72.7273 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 29.9351 | 28.5016 | 31.5205 | 88.2158 | 525 | 1317 | 539 | 1171 | 52 | 4.4407 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | * | 52.2205 | 37.9310 | 83.7838 | 88.2166 | 33 | 54 | 31 | 6 | 5 | 83.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 88.2181 | 201 | 0 | 198 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.7337 | 96.8858 | 98.5965 | 88.2183 | 280 | 9 | 281 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | homalt | 80.3571 | 67.1642 | 100.0000 | 88.2199 | 45 | 22 | 45 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | het | 98.2113 | 98.0458 | 98.3773 | 88.2203 | 2910 | 58 | 2910 | 48 | 29 | 60.4167 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | het | 95.2424 | 94.6502 | 95.8420 | 88.2223 | 460 | 26 | 461 | 20 | 3 | 15.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.9094 | 96.7480 | 99.0991 | 88.2228 | 238 | 8 | 220 | 2 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l125_m2_e0 | * | 70.8577 | 55.1491 | 99.0796 | 88.2228 | 16687 | 13571 | 16685 | 155 | 5 | 3.2258 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e0 | het | 94.9153 | 91.8033 | 98.2456 | 88.2231 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 88.2263 | 0 | 0 | 0 | 77 | 28 | 36.3636 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5702 | 98.7805 | 92.5620 | 88.2296 | 162 | 2 | 112 | 9 | 7 | 77.7778 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | het | 96.3840 | 97.3829 | 95.4054 | 88.2297 | 707 | 19 | 706 | 34 | 3 | 8.8235 | |
| ndellapenna-hhga | SNP | ti | segdup | homalt | 99.7406 | 99.8934 | 99.5882 | 88.2312 | 7497 | 8 | 7497 | 31 | 31 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.3789 | 99.1736 | 99.5851 | 88.2324 | 240 | 2 | 240 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | * | 96.3387 | 96.8495 | 95.8333 | 88.2337 | 830 | 27 | 828 | 36 | 7 | 19.4444 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | het | 54.5455 | 42.8571 | 75.0000 | 88.2353 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 88.2353 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.1183 | 81.1111 | 85.2273 | 88.2353 | 73 | 17 | 75 | 13 | 6 | 46.1538 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | het | 74.5902 | 87.5000 | 65.0000 | 88.2353 | 7 | 1 | 13 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7013 | 97.4359 | 100.0000 | 88.2353 | 38 | 1 | 38 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 88.2353 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 88.2353 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 63.1579 | 54.5455 | 75.0000 | 88.2353 | 6 | 5 | 12 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 63.4921 | 48.7805 | 90.9091 | 88.2353 | 20 | 21 | 20 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.2353 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 88.2353 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 28 | 0 | 28 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 47.5000 | 88.2353 | 0 | 0 | 38 | 42 | 8 | 19.0476 | |