PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54801-54850 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | map_l250_m2_e0 | homalt | 82.1383 | 80.2173 | 84.1537 | 87.5709 | 1403 | 346 | 1402 | 264 | 189 | 71.5909 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | het | 91.7565 | 91.2612 | 92.2573 | 87.5714 | 6339 | 607 | 6339 | 532 | 282 | 53.0075 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3065 | 99.4444 | 99.1690 | 87.5731 | 716 | 4 | 716 | 6 | 6 | 100.0000 | |
| anovak-vg | SNP | * | map_l250_m1_e0 | homalt | 83.7735 | 72.4320 | 99.3262 | 87.5733 | 1784 | 679 | 1769 | 12 | 8 | 66.6667 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 87.5758 | 41 | 3 | 41 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | homalt | 99.5188 | 99.2099 | 99.8296 | 87.5758 | 1758 | 14 | 1758 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.6913 | 98.9198 | 98.4639 | 87.5787 | 1282 | 14 | 1282 | 20 | 9 | 45.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e0 | * | 59.4733 | 61.3769 | 57.6842 | 87.5801 | 526 | 331 | 548 | 402 | 273 | 67.9104 | |
| hfeng-pmm1 | INDEL | * | map_siren | hetalt | 96.4361 | 93.1174 | 100.0000 | 87.5803 | 230 | 17 | 232 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 18.2169 | 11.6667 | 41.5385 | 87.5836 | 56 | 424 | 54 | 76 | 61 | 80.2632 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.5854 | 109 | 3 | 109 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 10.5727 | 87.5855 | 0 | 0 | 48 | 406 | 22 | 5.4187 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 87.5862 | 36 | 1 | 36 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | * | 98.5286 | 97.5995 | 99.4757 | 87.5868 | 2846 | 70 | 2846 | 15 | 7 | 46.6667 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | homalt | 97.3588 | 97.5352 | 97.1831 | 87.5874 | 277 | 7 | 276 | 8 | 5 | 62.5000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 78.1655 | 88.8889 | 69.7509 | 87.5883 | 120 | 15 | 196 | 85 | 9 | 10.5882 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.1169 | 76.1905 | 91.4286 | 87.5887 | 32 | 10 | 32 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 93.0516 | 89.7370 | 96.6205 | 87.5894 | 1740 | 199 | 1744 | 61 | 7 | 11.4754 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | het | 97.8071 | 96.6657 | 98.9758 | 87.5900 | 3189 | 110 | 3189 | 33 | 16 | 48.4848 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.5912 | 18 | 1 | 17 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | hetalt | 93.7500 | 100.0000 | 88.2353 | 87.5912 | 15 | 0 | 15 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_siren | het | 96.6183 | 97.1429 | 96.0993 | 87.5935 | 272 | 8 | 271 | 11 | 2 | 18.1818 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.7742 | 100.0000 | 93.7500 | 87.5969 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | homalt | 43.0457 | 27.4256 | 100.0000 | 87.5971 | 3115 | 8243 | 3115 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 74.3678 | 72.8507 | 75.9494 | 87.5981 | 161 | 60 | 180 | 57 | 16 | 28.0702 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | homalt | 78.8406 | 82.6748 | 75.3463 | 87.5988 | 272 | 57 | 272 | 89 | 78 | 87.6404 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 66.8790 | 66.0377 | 67.7419 | 87.6000 | 35 | 18 | 84 | 40 | 3 | 7.5000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 87.6000 | 31 | 2 | 31 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m2_e1 | homalt | 99.5018 | 99.1906 | 99.8149 | 87.6004 | 2696 | 22 | 2696 | 5 | 5 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.2529 | 100.0000 | 89.1304 | 87.6011 | 41 | 0 | 41 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.5000 | 98.0100 | 98.9950 | 87.6012 | 197 | 4 | 197 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | map_siren | het | 90.9729 | 98.0035 | 84.8835 | 87.6032 | 4418 | 90 | 4408 | 785 | 417 | 53.1210 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e1 | het | 98.9247 | 97.8723 | 100.0000 | 87.6033 | 46 | 1 | 45 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2643 | 91.7476 | 96.9231 | 87.6033 | 189 | 17 | 189 | 6 | 2 | 33.3333 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | het | 94.2221 | 95.7257 | 92.7651 | 87.6052 | 5039 | 225 | 5039 | 393 | 175 | 44.5293 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e0 | het | 98.9011 | 97.8261 | 100.0000 | 87.6056 | 45 | 1 | 44 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | het | 98.0041 | 98.4674 | 97.5450 | 87.6065 | 514 | 8 | 596 | 15 | 5 | 33.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | het | 93.0123 | 97.0370 | 89.3082 | 87.6072 | 131 | 4 | 142 | 17 | 9 | 52.9412 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.2581 | 98.5075 | 98.0100 | 87.6079 | 198 | 3 | 197 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | homalt | 80.3738 | 67.1875 | 100.0000 | 87.6081 | 43 | 21 | 43 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | * | 83.4201 | 85.3893 | 81.5397 | 87.6090 | 976 | 167 | 985 | 223 | 82 | 36.7713 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | * | 97.3913 | 95.7265 | 99.1150 | 87.6096 | 112 | 5 | 112 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 87.6106 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m1_e0 | het | 98.0080 | 97.6190 | 98.4000 | 87.6115 | 123 | 3 | 123 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | homalt | 97.9462 | 98.2808 | 97.6139 | 87.6142 | 343 | 6 | 450 | 11 | 10 | 90.9091 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 96.2963 | 87.6147 | 0 | 0 | 26 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.6147 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | homalt | 89.2857 | 86.2069 | 92.5926 | 87.6147 | 25 | 4 | 25 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | * | 82.6884 | 71.0618 | 98.8636 | 87.6156 | 609 | 248 | 609 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5322 | 98.6213 | 98.4432 | 87.6162 | 1073 | 15 | 1075 | 17 | 4 | 23.5294 | |